Gene annotation
Transcriptome id Sobic.004G285900.4,Sobic.004G285900.3
Synonym NFD03, NFD3, HMGB3, Sb04g032180
Functional annotation HMG1/2, putative, expressed
UniProt A0A1Z5RQD6 , A0A1Z5RPI4
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF187
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003682chromatin binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G17560 : high mobility group B4
RAP-DB (Rice) LOC_Os02g44930.1 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a032275 , Zm00025a021469
Brachypodium KQK00686
Barley HORVU6Hr1G064720.2 , HORVU6Hr1G064720.1
Wheat TraesCS6B02G271600 , TraesCS6B02G271600 , TraesCS6A02G253900 , TraesCS6D02G235400 , TraesCS6D02G235400
Populus -


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cDNA sequences
Sobic.004G285900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
2 Sobic.001G261549 - -
3 Sobic.004G279601 - K11254: histone H4
4 Sobic.007G214700 fasciclin domain containing protein, expressed -
5 Sobic.006G102900 expressed protein -
6 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
7 Sobic.007G154500 F-box protein, putative, expressed -
8 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
9 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
10 Sobic.003G135400 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
11 Sobic.002G258300 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.004G217450 - -
14 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
15 Sobic.003G107200 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
16 Sobic.001G300400 expansin precursor, putative, expressed -
17 Sobic.005G047100 actin, putative, expressed K10355: actin, other eukaryote
18 Sobic.006G116500 expressed protein -
19 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
20 Sobic.003G279100 mitochondrial ATP synthase g subunit family protein, putative, expressed K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g


Gene co-expression network
sample Sobic004G285900 Sobic004G285900 Sobic001G078600 Sobic001G078600 Sobic004G285900--Sobic001G078600 Sobic001G261549 Sobic001G261549 Sobic004G285900--Sobic001G261549 Sobic004G279601 Sobic004G279601 Sobic004G285900--Sobic004G279601 Sobic007G214700 Sobic007G214700 Sobic004G285900--Sobic007G214700 Sobic006G102900 Sobic006G102900 Sobic004G285900--Sobic006G102900 Sobic002G162300 Sobic002G162300 Sobic004G285900--Sobic002G162300 Sobic007G154500 Sobic007G154500 Sobic004G285900--Sobic007G154500 Sobic009G189200 Sobic009G189200 Sobic004G285900--Sobic009G189200 Sobic001G205000 Sobic001G205000 Sobic004G285900--Sobic001G205000 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic001G078600--Sobic010G274000 Sobic005G144600 Sobic005G144600 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic001G078600--Sobic004G285900 Sobic006G116500 Sobic006G116500 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic001G078600--Sobic007G154500 Sobic001G261549--Sobic006G102900 Sobic001G261549--Sobic004G285900 Sobic001G261549--Sobic009G189200 Sobic006G191700 Sobic006G191700 Sobic001G261549--Sobic006G191700 Sobic009G194900 Sobic009G194900 Sobic001G261549--Sobic009G194900 Sobic003G107200 Sobic003G107200 Sobic001G261549--Sobic003G107200 Sobic001G261549--Sobic001G078600 Sobic001G261549--Sobic007G154500 Sobic008G096200 Sobic008G096200 Sobic001G261549--Sobic008G096200 Sobic004G279601--Sobic001G205000 Sobic006G076400 Sobic006G076400 Sobic004G279601--Sobic006G076400 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic006G081800 Sobic006G081800 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic004G279601--Sobic001G261549 Sobic007G214700--Sobic004G285900 Sobic007G214700--Sobic001G261549 Sobic001G300400 Sobic001G300400 Sobic007G214700--Sobic001G300400 Sobic007G214700--Sobic004G279601 Sobic007G176800 Sobic007G176800 Sobic007G214700--Sobic007G176800 Sobic007G214700--Sobic001G078600 Sobic002G179150 Sobic002G179150 Sobic007G214700--Sobic002G179150 Sobic007G214700--Sobic002G162300 Sobic004G313200 Sobic004G313200 Sobic007G214700--Sobic004G313200 Sobic006G102900--Sobic001G078600 Sobic006G102900--Sobic003G107200 Sobic009G181500 Sobic009G181500 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic006G102900--Sobic010G274000 Sobic004G047100 Sobic004G047100 Sobic006G102900--Sobic004G047100 Sobic006G102900--Sobic009G189200 Sobic002G162300--Sobic001G078600 Sobic002G162300--Sobic004G285900 Sobic002G162300--Sobic006G081800 Sobic002G162300--Sobic006G102900 Sobic006G138900 Sobic006G138900 Sobic002G162300--Sobic006G138900 Sobic009G120700 Sobic009G120700 Sobic002G162300--Sobic009G120700 Sobic002G162300--Sobic001G261549 Sobic001G401600 Sobic001G401600 Sobic002G162300--Sobic001G401600 Sobic002G162300--Sobic004G279601 Sobic007G154500--Sobic006G102900 Sobic007G154500--Sobic001G078600 Sobic007G154500--Sobic002G426800 Sobic002G146601 Sobic002G146601 Sobic007G154500--Sobic002G146601 Sobic007G154500--Sobic003G107200 Sobic007G154500--Sobic006G116500 Sobic007G154500--Sobic004G047100 Sobic007G154500--Sobic001G261549 Sobic007G154500--Sobic004G285900 Sobic009G189200--Sobic006G102900 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic010G144900 Sobic010G144900 Sobic009G189200--Sobic010G144900 Sobic007G044400 Sobic007G044400 Sobic009G189200--Sobic007G044400 Sobic009G189200--Sobic004G285900 Sobic003G084300 Sobic003G084300 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic001G205000--Sobic004G279601 Sobic007G207700 Sobic007G207700 Sobic001G205000--Sobic007G207700 Sobic003G328500 Sobic003G328500 Sobic001G205000--Sobic003G328500 Sobic001G205000--Sobic004G285900 Sobic006G134200 Sobic006G134200 Sobic001G205000--Sobic006G134200 Sobic001G205000--Sobic003G057100 Sobic005G016300 Sobic005G016300 Sobic001G205000--Sobic005G016300 Sobic001G205000--Sobic001G078600 Sobic001G205000--Sobic006G076400
Octagon: transcription factors


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