Gene annotation
Transcriptome id Sobic.003G011100.1,Sobic.003G011100.2
Synonym Sb03g001140, RTNLB1, BTI1
Functional annotation reticulon domain containing protein, putative, expressed
UniProt A0A1B6Q0R4 , A0A1B6Q0R1
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF70
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23630 : VIRB2-interacting protein 1
RAP-DB (Rice) LOC_Os01g12650.1 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022846 , Zm00025a035965
Brachypodium KQK03378
Barley HORVU3Hr1G030760.3 , HORVU3Hr1G030760.2 , HORVU3Hr1G030760.7 , HORVU3Hr1G030760.6 , HORVU3Hr1G030760.5 , HORVU3Hr1G030760.4
Wheat TraesCS3B02G178100 , TraesCS3A02G151200 , TraesCS3A02G151200 , TraesCS3D02G159100
Populus -


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cDNA sequences
Sobic.003G011100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G150800 expressed protein -
2 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
3 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
4 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
5 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
6 Sobic.009G144300 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
7 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
8 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
9 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
10 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
11 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
12 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
13 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.002G304900 60S ribosomal protein L15, putative, expressed K02877: RP-L15e, large subunit ribosomal protein L15e
15 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
16 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
17 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
18 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
19 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
20 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e


Gene co-expression network
sample Sobic003G011100 Sobic003G011100 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic006G201500 Sobic006G201500 Sobic003G011100--Sobic006G201500 Sobic003G396600 Sobic003G396600 Sobic003G011100--Sobic003G396600 Sobic009G144300 Sobic009G144300 Sobic003G011100--Sobic009G144300 Sobic006G115000 Sobic006G115000 Sobic003G011100--Sobic006G115000 Sobic003G387900 Sobic003G387900 Sobic003G011100--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic003G011100--Sobic009G233400 Sobic007G150800--Sobic001G475500 Sobic002G128800 Sobic002G128800 Sobic007G150800--Sobic002G128800 Sobic010G070500 Sobic010G070500 Sobic007G150800--Sobic010G070500 Sobic006G278100 Sobic006G278100 Sobic007G150800--Sobic006G278100 Sobic009G212200 Sobic009G212200 Sobic007G150800--Sobic009G212200 Sobic001G444800 Sobic001G444800 Sobic007G150800--Sobic001G444800 Sobic003G122200 Sobic003G122200 Sobic007G150800--Sobic003G122200 Sobic009G173500 Sobic009G173500 Sobic007G150800--Sobic009G173500 Sobic007G150800--Sobic003G011100 Sobic001G085400 Sobic001G085400 Sobic006G216600--Sobic001G085400 Sobic006G216600--Sobic003G387900 Sobic002G304900 Sobic002G304900 Sobic006G216600--Sobic002G304900 Sobic001G057300 Sobic001G057300 Sobic006G216600--Sobic001G057300 Sobic002G049300 Sobic002G049300 Sobic006G216600--Sobic002G049300 Sobic006G216600--Sobic009G144300 Sobic002G115000 Sobic002G115000 Sobic006G216600--Sobic002G115000 Sobic002G047600 Sobic002G047600 Sobic006G216600--Sobic002G047600 Sobic003G363800 Sobic003G363800 Sobic006G216600--Sobic003G363800 Sobic001G502900 Sobic001G502900 Sobic001G475500--Sobic001G502900 Sobic003G160700 Sobic003G160700 Sobic001G475500--Sobic003G160700 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic003G117500 Sobic003G117500 Sobic001G475500--Sobic003G117500 Sobic006G201500--Sobic002G115000 Sobic006G201500--Sobic001G085400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic007G019000 Sobic007G019000 Sobic006G201500--Sobic007G019000 Sobic010G069400 Sobic010G069400 Sobic006G201500--Sobic010G069400 Sobic001G058900 Sobic001G058900 Sobic006G201500--Sobic001G058900 Sobic008G098800 Sobic008G098800 Sobic006G201500--Sobic008G098800 Sobic003G249700 Sobic003G249700 Sobic006G201500--Sobic003G249700 Sobic006G200000 Sobic006G200000 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic001G334300 Sobic001G334300 Sobic009G144300--Sobic001G334300 Sobic009G144300--Sobic001G085400 Sobic009G227400 Sobic009G227400 Sobic009G144300--Sobic009G227400 Sobic009G144300--Sobic009G233400 Sobic009G144300--Sobic002G304900 Sobic009G144300--Sobic003G387900 Sobic009G144300--Sobic006G216600 Sobic009G144300--Sobic002G049300 Sobic002G255100 Sobic002G255100 Sobic009G144300--Sobic002G255100 Sobic003G018600 Sobic003G018600 Sobic006G115000--Sobic003G018600 Sobic002G286900 Sobic002G286900 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic006G115000--Sobic010G069400 Sobic006G137100 Sobic006G137100 Sobic006G115000--Sobic006G137100 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic003G387900--Sobic006G137100 Sobic006G213000 Sobic006G213000 Sobic003G387900--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic003G387900--Sobic002G379500 Sobic007G019400 Sobic007G019400 Sobic003G387900--Sobic007G019400 Sobic009G076400 Sobic009G076400 Sobic003G387900--Sobic009G076400 Sobic003G387900--Sobic003G249700 Sobic003G387900--Sobic002G047600 Sobic003G387900--Sobic010G069400 Sobic002G056200 Sobic002G056200 Sobic003G387900--Sobic002G056200 Sobic009G233400--Sobic001G334300 Sobic009G233400--Sobic002G304900 Sobic009G233400--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic009G233400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic009G233400--Sobic005G050500 Sobic009G233400--Sobic001G058900 Sobic009G233400--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic009G233400--Sobic003G109600 Sobic009G233400--Sobic001G085400
Octagon: transcription factors


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