Gene annotation
Transcriptome id Sobic.003G396600.1
Synonym HDA3, HDT1, HD2A, Sb03g043350, ATHD2A
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
ZOS5-12 - C2H2 zinc finger protein, expressed
UniProt C5XFK2
Pfam PF12874
Panther DB PTHR31802
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44750 : histone deacetylase 3
RAP-DB (Rice) LOC_Os05g51830.1 : ZOS5-12 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a039395 , Zm00025a039396 , Zm00025a026343
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G200000 RNA recognition motif, putative, expressed -
2 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
3 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
4 Sobic.005G080900 expressed protein -
5 Sobic.010G115200 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
6 Sobic.009G088200 -(PubMedID : 26976818)@triosephosphate/phosphate translocator(PubMedID : 27016024)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
7 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
8 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
9 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
10 Sobic.010G138300 DUF617 domain containing protein, expressed -
11 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
13 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
14 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
15 Sobic.003G340100 "domain confirmed by Pfam database, expressed in leaf, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
16 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.009G233400 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
18 Sobic.004G252100 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
19 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
20 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e


Gene co-expression network
sample Sobic003G396600 Sobic003G396600 Sobic006G200000 Sobic006G200000 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic010G115200 Sobic010G115200 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic010G265900 Sobic010G265900 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic004G349700--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic004G349700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic004G349700--Sobic003G387900 Sobic001G085400 Sobic001G085400 Sobic004G349700--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic004G349700--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic004G349700--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic004G349700--Sobic009G233400 Sobic002G115000 Sobic002G115000 Sobic004G349700--Sobic002G115000 Sobic007G019400 Sobic007G019400 Sobic004G349700--Sobic007G019400 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic006G201500 Sobic006G201500 Sobic003G011100--Sobic006G201500 Sobic003G011100--Sobic003G396600 Sobic009G144300 Sobic009G144300 Sobic003G011100--Sobic009G144300 Sobic006G115000 Sobic006G115000 Sobic003G011100--Sobic006G115000 Sobic003G011100--Sobic003G387900 Sobic003G011100--Sobic009G233400 Sobic003G436700 Sobic003G436700 Sobic005G080900--Sobic003G436700 Sobic003G109600 Sobic003G109600 Sobic005G080900--Sobic003G109600 Sobic004G252100 Sobic004G252100 Sobic005G080900--Sobic004G252100 Sobic002G379500 Sobic002G379500 Sobic005G080900--Sobic002G379500 Sobic006G067800 Sobic006G067800 Sobic005G080900--Sobic006G067800 Sobic009G101700 Sobic009G101700 Sobic005G080900--Sobic009G101700 Sobic006G261900 Sobic006G261900 Sobic005G080900--Sobic006G261900 Sobic001G016500 Sobic001G016500 Sobic005G080900--Sobic001G016500 Sobic002G286900 Sobic002G286900 Sobic005G080900--Sobic002G286900 Sobic001G361600 Sobic001G361600 Sobic010G115200--Sobic001G361600 Sobic010G115200--Sobic004G252100 Sobic010G115200--Sobic004G349700 Sobic006G057200 Sobic006G057200 Sobic010G115200--Sobic006G057200 Sobic010G115200--Sobic003G396600 Sobic010G115200--Sobic006G200000 Sobic005G113300 Sobic005G113300 Sobic010G115200--Sobic005G113300 Sobic003G347900 Sobic003G347900 Sobic010G115200--Sobic003G347900 Sobic010G115200--Sobic010G069400 Sobic004G355500 Sobic004G355500 Sobic009G088200--Sobic004G355500 Sobic002G280700 Sobic002G280700 Sobic009G088200--Sobic002G280700 Sobic007G152900 Sobic007G152900 Sobic009G088200--Sobic007G152900 Sobic009G088200--Sobic003G396600 Sobic007G079600 Sobic007G079600 Sobic009G088200--Sobic007G079600 Sobic001G078600 Sobic001G078600 Sobic009G088200--Sobic001G078600 Sobic001G103000 Sobic001G103000 Sobic009G088200--Sobic001G103000 Sobic010G032700 Sobic010G032700 Sobic009G088200--Sobic010G032700 Sobic005G047100 Sobic005G047100 Sobic009G088200--Sobic005G047100 Sobic009G104100 Sobic009G104100 Sobic002G101000--Sobic009G104100 Sobic007G220900 Sobic007G220900 Sobic002G101000--Sobic007G220900 Sobic007G029400 Sobic007G029400 Sobic002G101000--Sobic007G029400 Sobic009G179100 Sobic009G179100 Sobic002G101000--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic002G101000--Sobic005G050500 Sobic002G101000--Sobic009G101700 Sobic002G054000 Sobic002G054000 Sobic002G101000--Sobic002G054000 Sobic004G342400 Sobic004G342400 Sobic002G101000--Sobic004G342400 Sobic002G101000--Sobic004G349700 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400 Sobic001G371100 Sobic001G371100 Sobic001G397000--Sobic001G371100 Sobic001G397000--Sobic003G300900 Sobic001G397000--Sobic003G396600 Sobic007G134800 Sobic007G134800 Sobic001G397000--Sobic007G134800 Sobic010G144900 Sobic010G144900 Sobic001G397000--Sobic010G144900 Sobic008G100700 Sobic008G100700 Sobic001G397000--Sobic008G100700 Sobic001G081900 Sobic001G081900 Sobic001G397000--Sobic001G081900 Sobic001G397000--Sobic002G101000 Sobic001G228200 Sobic001G228200 Sobic001G397000--Sobic001G228200
Octagon: transcription factors


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