Gene annotation
Transcriptome id Sobic.001G157800.1
Synonym RPT3, Sb01g013750
Functional annotation 26S protease regulatory subunit 6B, putative, expressed
UniProt C5WR90
Pfam PF07728
Panther DB PTHR23073 PTHR23073:SF38
NCBI CDD -
KEGG Orthology K03063; PSMC4, 26S proteasome regulatory subunit T3
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G58290 : regulatory particle triple-A ATPase 3
RAP-DB (Rice) LOC_Os02g21970.1 : 26S protease regulatory subunit 6B, putative, expressed
MaizeGDB (Corn) Zm00025a031420 , Zm00025a019679
Brachypodium KQJ94469 , KQJ90240
Barley HORVU2Hr1G014080.1 , HORVU4Hr1G054820.9 , HORVU2Hr1G107280.1 , HORVU2Hr1G107280.2 , HORVU2Hr1G107280.3 , HORVU2Hr1G014000.1 , HORVU2Hr1G014000.2 , HORVU3Hr1G067470.3 , HORVU3Hr1G067470.2 , HORVU3Hr1G067470.1 , HORVU3Hr1G067470.6 , HORVU3Hr1G067470.5 , HORVU2Hr1G014050.1
Wheat TraesCS2B02G100400 , TraesCS2D02G083900 , TraesCS2D02G476000 , TraesCS2B02G499600 , TraesCS2A02G086400 , TraesCS2A02G475900 , TraesCS2A02G475900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
2 Sobic.006G200000 RNA recognition motif, putative, expressed -
3 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.002G385400 ORC6 - Putative origin recognition complex subunit 6, expressed K02608: origin recognition complex subunit 6
5 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
6 Sobic.003G294100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydropyrimidinase, putative, expressed K01465: URA4, dihydroorotase
7 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
8 Sobic.002G361700 expressed protein -
9 Sobic.007G044400 MSP domain containing protein, expressed -
10 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
11 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
12 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
13 Sobic.008G102800 expressed protein -
14 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
15 Sobic.005G120500 expressed protein -
16 Sobic.004G274900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
17 Sobic.001G453900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SEC14 cytosolic factor family protein, putative, expressed -
18 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
19 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
20 Sobic.006G083000 CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2


Gene co-expression network
sample Sobic001G157800 Sobic001G157800 Sobic003G084300 Sobic003G084300 Sobic001G157800--Sobic003G084300 Sobic006G200000 Sobic006G200000 Sobic001G157800--Sobic006G200000 Sobic003G396600 Sobic003G396600 Sobic001G157800--Sobic003G396600 Sobic002G385400 Sobic002G385400 Sobic001G157800--Sobic002G385400 Sobic003G096000 Sobic003G096000 Sobic001G157800--Sobic003G096000 Sobic003G294100 Sobic003G294100 Sobic001G157800--Sobic003G294100 Sobic010G265900 Sobic010G265900 Sobic001G157800--Sobic010G265900 Sobic002G361700 Sobic002G361700 Sobic001G157800--Sobic002G361700 Sobic007G044400 Sobic007G044400 Sobic001G157800--Sobic007G044400 Sobic003G084300--Sobic001G157800 Sobic009G165500 Sobic009G165500 Sobic003G084300--Sobic009G165500 Sobic009G189200 Sobic009G189200 Sobic003G084300--Sobic009G189200 Sobic003G011100 Sobic003G011100 Sobic003G084300--Sobic003G011100 Sobic003G084300--Sobic002G385400 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic003G084300--Sobic006G200000 Sobic006G102900 Sobic006G102900 Sobic003G084300--Sobic006G102900 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic005G080900 Sobic005G080900 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic010G115200 Sobic010G115200 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic003G396600--Sobic006G200000 Sobic004G349700 Sobic004G349700 Sobic003G396600--Sobic004G349700 Sobic003G396600--Sobic003G011100 Sobic003G396600--Sobic005G080900 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic010G069400 Sobic010G069400 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic004G217450 Sobic004G217450 Sobic002G385400--Sobic004G217450 Sobic010G023900 Sobic010G023900 Sobic002G385400--Sobic010G023900 Sobic002G385400--Sobic002G258300 Sobic004G342400 Sobic004G342400 Sobic002G385400--Sobic004G342400 Sobic002G385400--Sobic003G084300 Sobic002G385400--Sobic005G080900 Sobic002G385400--Sobic003G034600 Sobic004G274900 Sobic004G274900 Sobic002G385400--Sobic004G274900 Sobic006G115000 Sobic006G115000 Sobic002G385400--Sobic006G115000 Sobic004G056400 Sobic004G056400 Sobic003G096000--Sobic004G056400 Sobic010G089500 Sobic010G089500 Sobic003G096000--Sobic010G089500 Sobic001G350600 Sobic001G350600 Sobic003G096000--Sobic001G350600 Sobic010G101600 Sobic010G101600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic001G030300 Sobic001G030300 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic006G013000 Sobic006G013000 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic009G059500 Sobic009G059500 Sobic003G294100--Sobic009G059500 Sobic008G168100 Sobic008G168100 Sobic003G294100--Sobic008G168100 Sobic002G280700 Sobic002G280700 Sobic003G294100--Sobic002G280700 Sobic003G294100--Sobic001G157800 Sobic009G250100 Sobic009G250100 Sobic003G294100--Sobic009G250100 Sobic002G186900 Sobic002G186900 Sobic003G294100--Sobic002G186900 Sobic002G271300 Sobic002G271300 Sobic003G294100--Sobic002G271300 Sobic008G126600 Sobic008G126600 Sobic003G294100--Sobic008G126600 Sobic007G152900 Sobic007G152900 Sobic003G294100--Sobic007G152900 Sobic010G265900--Sobic006G200000 Sobic005G120500 Sobic005G120500 Sobic010G265900--Sobic005G120500 Sobic010G265900--Sobic006G102900 Sobic010G265900--Sobic005G080900 Sobic010G265900--Sobic003G084300 Sobic010G265900--Sobic009G189200 Sobic010G265900--Sobic006G120700 Sobic010G265900--Sobic001G157800 Sobic004G344500 Sobic004G344500 Sobic010G265900--Sobic004G344500 Sobic006G156000 Sobic006G156000 Sobic002G361700--Sobic006G156000 Sobic001G418900 Sobic001G418900 Sobic002G361700--Sobic001G418900 Sobic004G212300 Sobic004G212300 Sobic002G361700--Sobic004G212300 Sobic002G257300 Sobic002G257300 Sobic002G361700--Sobic002G257300 Sobic003G443300 Sobic003G443300 Sobic002G361700--Sobic003G443300 Sobic009G238900 Sobic009G238900 Sobic002G361700--Sobic009G238900 Sobic003G219800 Sobic003G219800 Sobic002G361700--Sobic003G219800 Sobic004G138800 Sobic004G138800 Sobic002G361700--Sobic004G138800 Sobic001G505500 Sobic001G505500 Sobic002G361700--Sobic001G505500 Sobic001G196100 Sobic001G196100 Sobic007G044400--Sobic001G196100 Sobic007G044400--Sobic009G189200 Sobic001G116000 Sobic001G116000 Sobic007G044400--Sobic001G116000 Sobic001G026600 Sobic001G026600 Sobic007G044400--Sobic001G026600 Sobic002G313600 Sobic002G313600 Sobic007G044400--Sobic002G313600 Sobic007G044400--Sobic006G102900 Sobic007G044400--Sobic009G059500 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800
Octagon: transcription factors


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