Gene annotation
Transcriptome id Sobic.007G092100.1
Synonym ATARL1, Sb07g008560, ARL1, ARF3
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt C5YJL5
Pfam PF08477
Panther DB PTHR11711
NCBI CDD KOG0070; GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07942; ADP-ribosylation factor-like protein 1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT2G24765 : ADP-ribosylation factor 3
RAP-DB (Rice) LOC_Os08g15040.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a029889
Brachypodium KQJ95788
Barley HORVU7Hr1G061220.1 , HORVU7Hr1G061220.2 , HORVU7Hr1G061220.3 , HORVU7Hr1G061220.4
Wheat TraesCS7B02G181400 , TraesCS7B02G181400 , TraesCS7D02G282400 , TraesCS7D02G282400 , TraesCS7D02G282400 , TraesCS7A02G284000 , TraesCS7A02G284000 , TraesCS7A02G284000
Populus -


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cDNA sequences
Sobic.007G092100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
2 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
3 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
4 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
5 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
6 Sobic.003G330500 peptidase, T1 family, putative, expressed -
7 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
8 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
9 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.007G177200 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
11 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
12 Sobic.001G031900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
14 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
15 Sobic.002G356400 NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed K03937: NADH dehydrogenase (ubiquinone) Fe-S protein 4
16 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
17 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
18 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
19 Sobic.007G115100 hydrolase, NUDIX family, domain containing protein, expressed -
20 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit


Gene co-expression network
sample Sobic007G092100 Sobic007G092100 Sobic004G066800 Sobic004G066800 Sobic007G092100--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G092100--Sobic001G057300 Sobic001G505500 Sobic001G505500 Sobic007G092100--Sobic001G505500 Sobic001G035400 Sobic001G035400 Sobic007G092100--Sobic001G035400 Sobic001G342200 Sobic001G342200 Sobic007G092100--Sobic001G342200 Sobic003G330500 Sobic003G330500 Sobic007G092100--Sobic003G330500 Sobic001G096100 Sobic001G096100 Sobic007G092100--Sobic001G096100 Sobic004G138800 Sobic004G138800 Sobic007G092100--Sobic004G138800 Sobic009G191200 Sobic009G191200 Sobic007G092100--Sobic009G191200 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic004G066800--Sobic009G191200 Sobic006G216600 Sobic006G216600 Sobic001G057300--Sobic006G216600 Sobic002G304900 Sobic002G304900 Sobic001G057300--Sobic002G304900 Sobic008G135000 Sobic008G135000 Sobic001G057300--Sobic008G135000 Sobic001G058900 Sobic001G058900 Sobic001G057300--Sobic001G058900 Sobic001G334300 Sobic001G334300 Sobic001G057300--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic001G057300--Sobic001G085400 Sobic006G035900 Sobic006G035900 Sobic001G057300--Sobic006G035900 Sobic002G115000 Sobic002G115000 Sobic001G057300--Sobic002G115000 Sobic003G387900 Sobic003G387900 Sobic001G057300--Sobic003G387900 Sobic001G505500--Sobic004G138800 Sobic001G418900 Sobic001G418900 Sobic001G505500--Sobic001G418900 Sobic007G115100 Sobic007G115100 Sobic001G505500--Sobic007G115100 Sobic007G076300 Sobic007G076300 Sobic001G505500--Sobic007G076300 Sobic001G505500--Sobic007G092100 Sobic001G505500--Sobic001G334300 Sobic001G018800 Sobic001G018800 Sobic001G505500--Sobic001G018800 Sobic009G227400 Sobic009G227400 Sobic001G505500--Sobic009G227400 Sobic001G505500--Sobic001G513500 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic002G087000 Sobic002G087000 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic001G342200--Sobic007G115100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic004G170400 Sobic004G170400 Sobic001G342200--Sobic004G170400 Sobic001G074700 Sobic001G074700 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic004G224900 Sobic004G224900 Sobic003G330500--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic006G252200 Sobic006G252200 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic004G138800--Sobic001G418900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic004G138800--Sobic006G252200 Sobic009G233400 Sobic009G233400 Sobic009G191200--Sobic009G233400 Sobic009G191200--Sobic008G135000 Sobic009G191200--Sobic001G334300 Sobic009G191200--Sobic001G058900 Sobic009G191200--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic009G191200--Sobic002G049300 Sobic003G280700 Sobic003G280700 Sobic009G191200--Sobic003G280700 Sobic009G191200--Sobic001G085400 Sobic009G191200--Sobic002G304900
Octagon: transcription factors


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