Gene annotation
Transcriptome id Sobic.001G096100.1
Synonym Sb01g008610
Functional annotation DNA-binding protein-related, putative, expressed
UniProt C5X1A1
Pfam -
Panther DB PTHR31472 PTHR31472:SF4
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10590 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os05g01050.1 : DNA-binding protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a039026
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G096100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
2 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
3 Sobic.003G330500 peptidase, T1 family, putative, expressed -
4 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
5 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
6 Sobic.002G255100 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
7 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
8 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
9 Sobic.010G038700 expressed protein -
10 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
11 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
12 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
13 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
14 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
15 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
16 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
17 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
18 Sobic.005G105500 expressed protein -
19 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
20 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2


Gene co-expression network
sample Sobic001G096100 Sobic001G096100 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic004G224900 Sobic004G224900 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic003G129800 Sobic003G129800 Sobic004G066800--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic004G066800--Sobic004G310300 Sobic001G483100 Sobic001G483100 Sobic004G066800--Sobic001G483100 Sobic007G092100 Sobic007G092100 Sobic004G066800--Sobic007G092100 Sobic010G154700 Sobic010G154700 Sobic004G066800--Sobic010G154700 Sobic005G111100 Sobic005G111100 Sobic004G066800--Sobic005G111100 Sobic001G513500 Sobic001G513500 Sobic004G066800--Sobic001G513500 Sobic003G155400 Sobic003G155400 Sobic004G066800--Sobic003G155400 Sobic009G191200 Sobic009G191200 Sobic004G066800--Sobic009G191200 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic001G505500 Sobic001G505500 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic004G138800--Sobic006G252200 Sobic003G330500--Sobic004G224900 Sobic007G176200 Sobic007G176200 Sobic003G330500--Sobic007G176200 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic003G330500--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic009G227400 Sobic009G227400 Sobic002G255100--Sobic009G227400 Sobic009G144300 Sobic009G144300 Sobic002G255100--Sobic009G144300 Sobic001G334300 Sobic001G334300 Sobic002G255100--Sobic001G334300 Sobic001G085400 Sobic001G085400 Sobic002G255100--Sobic001G085400 Sobic002G049300 Sobic002G049300 Sobic002G255100--Sobic002G049300 Sobic002G304900 Sobic002G304900 Sobic002G255100--Sobic002G304900 Sobic010G023900 Sobic010G023900 Sobic002G255100--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic002G255100--Sobic009G233400 Sobic004G216800 Sobic004G216800 Sobic002G255100--Sobic004G216800 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G481700--Sobic001G458700 Sobic001G481700--Sobic007G176200 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic003G196800--Sobic001G096100 Sobic003G196800--Sobic002G341800 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic010G038700--Sobic001G096100 Sobic009G045800 Sobic009G045800 Sobic010G038700--Sobic009G045800 Sobic001G018200 Sobic001G018200 Sobic010G038700--Sobic001G018200 Sobic010G038700--Sobic003G330500 Sobic004G262300 Sobic004G262300 Sobic010G038700--Sobic004G262300 Sobic010G038700--Sobic001G481700 Sobic008G127500 Sobic008G127500 Sobic010G038700--Sobic008G127500 Sobic009G168000 Sobic009G168000 Sobic010G038700--Sobic009G168000 Sobic010G038700--Sobic001G025600
Octagon: transcription factors


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