Gene annotation
Transcriptome id Sobic.001G481700.1
Synonym Sb01g045090, EIF3K, ATTIF3K1, TIF3K1
Functional annotation eukaryotic translation initiation factor 3 subunit K, putative, expressed
UniProt C5WVR8
Pfam PF10075
Panther DB PTHR13022
NCBI CDD KOG3252; Uncharacterized conserved protein
KEGG Orthology K15028; translation initiation factor 3 subunit K
Gene Ontology GO:0005852; eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT4G33250 : eukaryotic translation initiation factor 3K
RAP-DB (Rice) LOC_Os03g08450.1 : eukaryotic translation initiation factor 3 subunit K, putative, expressed
MaizeGDB (Corn) Zm00025a053260 , Zm00025a000947
Brachypodium KQK23287
Barley HORVU4Hr1G077250.1
Wheat TraesCS4D02G298100 , TraesCS4B02G299200 , TraesCS4A02G005900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G481700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
2 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
3 Sobic.010G100000 S4 domain containing protein, putative, expressed K14560: U3 small nucleolar ribonucleoprotein protein IMP3
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
6 Sobic.007G220900 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
7 Sobic.009G104100 peptidase, M24 family protein, putative, expressed -
8 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
9 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
10 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
11 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
12 Sobic.003G330500 peptidase, T1 family, putative, expressed -
13 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
14 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
15 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
16 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
17 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
18 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
19 Sobic.005G050500 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
20 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta


Gene co-expression network
sample Sobic001G481700 Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic004G224900--Sobic006G252200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic010G100000--Sobic001G513500 Sobic001G011200 Sobic001G011200 Sobic010G100000--Sobic001G011200 Sobic005G050500 Sobic005G050500 Sobic010G100000--Sobic005G050500 Sobic001G436200 Sobic001G436200 Sobic010G100000--Sobic001G436200 Sobic003G280700 Sobic003G280700 Sobic010G100000--Sobic003G280700 Sobic010G100000--Sobic001G481700 Sobic005G091700 Sobic005G091700 Sobic010G100000--Sobic005G091700 Sobic010G100000--Sobic001G018800 Sobic002G406500 Sobic002G406500 Sobic010G100000--Sobic002G406500 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic001G404100--Sobic006G252200 Sobic007G220900--Sobic001G481700 Sobic002G101000 Sobic002G101000 Sobic007G220900--Sobic002G101000 Sobic007G220900--Sobic010G100000 Sobic007G220900--Sobic001G513500 Sobic007G220900--Sobic009G104100 Sobic009G179100 Sobic009G179100 Sobic007G220900--Sobic009G179100 Sobic008G094600 Sobic008G094600 Sobic007G220900--Sobic008G094600 Sobic007G220900--Sobic001G025600 Sobic001G030300 Sobic001G030300 Sobic007G220900--Sobic001G030300 Sobic009G104100--Sobic002G101000 Sobic009G104100--Sobic001G481700 Sobic009G104100--Sobic004G224900 Sobic009G104100--Sobic005G050500 Sobic009G104100--Sobic007G220900 Sobic009G104100--Sobic003G330500 Sobic008G132400 Sobic008G132400 Sobic009G104100--Sobic008G132400 Sobic001G057300 Sobic001G057300 Sobic009G104100--Sobic001G057300 Sobic009G104100--Sobic007G076300 Sobic001G458700--Sobic007G176200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic001G458700--Sobic002G341800 Sobic001G458700--Sobic004G224900 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G458700--Sobic001G502200 Sobic001G458700--Sobic004G081800 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.