Gene annotation
Transcriptome id Sobic.003G287300.1
Synonym Sb03g033790
Functional annotation 50S ribosomal protein L20, putative, expressed
UniProt C5XJ42
Pfam PF00453
Panther DB PTHR10986
NCBI CDD KOG4707; Mitochondrial/chloroplast ribosomal protein L20
KEGG Orthology K02887; RP-L20, MRPL20, large subunit ribosomal protein L20
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G16740 : Ribosomal protein L20
RAP-DB (Rice) LOC_Os05g45220.1 : 50S ribosomal protein L20, putative, expressed
MaizeGDB (Corn) Zm00025a037998
Brachypodium -
Barley HORVU3Hr1G069670.3 , HORVU3Hr1G069670.2 , HORVU3Hr1G069670.1 , HORVU3Hr1G069670.6 , HORVU3Hr1G069670.5 , HORVU3Hr1G069670.4 , HORVU3Hr1G069680.2 , HORVU3Hr1G069680.1
Wheat TraesCS3A02G280300 , TraesCS3B02G314100 , TraesCS3D02G280000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
2 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
3 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
4 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.004G342400 ribosomal protein, putative, expressed K02894: RP-L23e, large subunit ribosomal protein L23e
6 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
7 Sobic.003G442400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
8 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
9 Sobic.010G023900 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
10 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
11 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
13 Sobic.004G213200 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
14 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
15 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6
16 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
17 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
18 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
19 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
20 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic003G287300 Sobic003G287300 Sobic001G025600 Sobic001G025600 Sobic003G287300--Sobic001G025600 Sobic003G160900 Sobic003G160900 Sobic003G287300--Sobic003G160900 Sobic001G481700 Sobic001G481700 Sobic003G287300--Sobic001G481700 Sobic001G096100 Sobic001G096100 Sobic003G287300--Sobic001G096100 Sobic004G342400 Sobic004G342400 Sobic003G287300--Sobic004G342400 Sobic008G073300 Sobic008G073300 Sobic003G287300--Sobic008G073300 Sobic003G442400 Sobic003G442400 Sobic003G287300--Sobic003G442400 Sobic002G371100 Sobic002G371100 Sobic003G287300--Sobic002G371100 Sobic010G023900 Sobic010G023900 Sobic003G287300--Sobic010G023900 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic001G025600--Sobic003G287300 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G160900--Sobic003G287300 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic004G002350 Sobic004G002350 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic004G138800 Sobic004G138800 Sobic001G096100--Sobic004G138800 Sobic003G330500 Sobic003G330500 Sobic001G096100--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic004G342400--Sobic010G023900 Sobic009G179100 Sobic009G179100 Sobic004G342400--Sobic009G179100 Sobic001G334300 Sobic001G334300 Sobic004G342400--Sobic001G334300 Sobic004G342400--Sobic009G144300 Sobic009G101700 Sobic009G101700 Sobic004G342400--Sobic009G101700 Sobic009G233400 Sobic009G233400 Sobic004G342400--Sobic009G233400 Sobic002G304900 Sobic002G304900 Sobic004G342400--Sobic002G304900 Sobic003G387900 Sobic003G387900 Sobic004G342400--Sobic003G387900 Sobic009G173500 Sobic009G173500 Sobic004G342400--Sobic009G173500 Sobic008G073300--Sobic004G066800 Sobic007G045600 Sobic007G045600 Sobic008G073300--Sobic007G045600 Sobic008G073300--Sobic002G371100 Sobic010G114700 Sobic010G114700 Sobic008G073300--Sobic010G114700 Sobic010G154700 Sobic010G154700 Sobic008G073300--Sobic010G154700 Sobic003G386100 Sobic003G386100 Sobic008G073300--Sobic003G386100 Sobic008G073300--Sobic001G025600 Sobic003G155400 Sobic003G155400 Sobic008G073300--Sobic003G155400 Sobic001G089500 Sobic001G089500 Sobic008G073300--Sobic001G089500 Sobic003G442400--Sobic001G025600 Sobic006G052400 Sobic006G052400 Sobic003G442400--Sobic006G052400 Sobic003G442400--Sobic004G103700 Sobic008G058300 Sobic008G058300 Sobic003G442400--Sobic008G058300 Sobic005G027300 Sobic005G027300 Sobic003G442400--Sobic005G027300 Sobic003G442400--Sobic003G287300 Sobic003G362400 Sobic003G362400 Sobic003G442400--Sobic003G362400 Sobic003G018600 Sobic003G018600 Sobic003G442400--Sobic003G018600 Sobic006G115000 Sobic006G115000 Sobic003G442400--Sobic006G115000 Sobic002G371100--Sobic001G018800 Sobic002G371100--Sobic008G073300 Sobic002G371100--Sobic001G025600 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic010G023900--Sobic004G342400 Sobic010G023900--Sobic001G334300 Sobic010G023900--Sobic009G227400 Sobic002G286900 Sobic002G286900 Sobic010G023900--Sobic002G286900 Sobic010G023900--Sobic003G387900 Sobic010G023900--Sobic009G179100 Sobic010G023900--Sobic009G233400 Sobic006G213000 Sobic006G213000 Sobic010G023900--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic010G023900--Sobic001G226500
Octagon: transcription factors


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