Gene annotation
Transcriptome id Sobic.010G013900.1
Synonym Sb10g001390
Functional annotation DAG protein, chloroplast precursor, putative, expressed
UniProt C5Z2V3
Pfam -
Panther DB PTHR31346:SF7 PTHR31346
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32580 : plastid developmental protein DAG, putative
RAP-DB (Rice) LOC_Os06g02600.1 : DAG protein, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050240 , Zm00025a041319
Brachypodium PNT76008 , KQK18487 , PNT76616 , PNT76617 , KQK19818 , KQK19819 , PNT76615 , KQK19788 , KQK19789 , KQK18495 , KQK18494 , KQK18492
Barley HORVU6Hr1G002030.3 , HORVU6Hr1G002030.1 , HORVU6Hr1G002030.6 , HORVU6Hr1G002030.5 , HORVU6Hr1G002030.4 , HORVU4Hr1G067740.2 , HORVU4Hr1G067740.3 , HORVU4Hr1G067740.1 , HORVU4Hr1G067740.6 , HORVU4Hr1G067740.4 , HORVU4Hr1G067740.9 , HORVU2Hr1G040170.9 , HORVU2Hr1G040170.6 , HORVU4Hr1G067740.10 , HORVU4Hr1G067740.12 , HORVU4Hr1G067740.13 , HORVU4Hr1G067740.15 , HORVU4Hr1G067740.16 , HORVU4Hr1G067740.17 , HORVU4Hr1G067740.18 , HORVU4Hr1G067740.19 , HORVU4Hr1G067740.25 , HORVU4Hr1G067740.26 , HORVU4Hr1G067740.21 , HORVU4Hr1G067740.20 , HORVU4Hr1G067740.29 , HORVU4Hr1G067740.32 , HORVU4Hr1G067740.33 , HORVU4Hr1G067740.30 , HORVU4Hr1G067740.31 , HORVU4Hr1G067740.36 , HORVU4Hr1G067740.34 , HORVU4Hr1G067740.35 , HORVU2Hr1G101720.1 , HORVU2Hr1G040170.29 , HORVU2Hr1G040170.28 , HORVU2Hr1G040170.23 , HORVU2Hr1G040170.22 , HORVU2Hr1G040170.21 , HORVU2Hr1G040170.20 , HORVU2Hr1G040170.27 , HORVU2Hr1G040170.26 , HORVU2Hr1G040170.25 , HORVU2Hr1G040170.24 , HORVU2Hr1G040170.12 , HORVU2Hr1G040170.10 , HORVU2Hr1G040170.11 , HORVU2Hr1G040170.17 , HORVU2Hr1G040170.14 , HORVU2Hr1G040170.15 , HORVU2Hr1G040170.18 , HORVU2Hr1G040170.19 , HORVU7Hr1G008880.4 , HORVU7Hr1G008880.3 , HORVU7Hr1G008880.2 , HORVU2Hr1G101720.3 , HORVU5Hr1G072150.8 , HORVU5Hr1G072150.9 , HORVU2Hr1G101720.2 , HORVU5Hr1G072150.1 , HORVU5Hr1G072150.2 , HORVU5Hr1G072150.3 , HORVU5Hr1G072150.5 , HORVU5Hr1G072150.6 , HORVU5Hr1G072150.7 , HORVU5Hr1G072150.10
Wheat TraesCS4A02G437100 , TraesCS2D02G434600 , TraesCS6D02G007100 , TraesCS2A02G437600 , TraesCS2B02G457700 , TraesCS6A02G005300 , TraesCS7D02G045100 , TraesCS7A02G050200 , TraesCS6B02G010000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G013900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
2 Sobic.002G371100 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
3 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
4 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
5 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
6 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
7 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
8 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
9 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
10 Sobic.010G114700 heat shock factor-binding protein 1, putative, expressed -
11 Sobic.004G216800 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
12 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
13 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
14 Sobic.010G038700 expressed protein -
15 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
16 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
17 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
18 Sobic.006G281200 csAtPR5, putative, expressed -
19 Sobic.003G308000 expressed protein K15902: PCC1, EKC/KEOPS complex subunit PCC1/LAGE3
20 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32


Gene co-expression network
sample Sobic010G013900 Sobic010G013900 Sobic001G025600 Sobic001G025600 Sobic010G013900--Sobic001G025600 Sobic002G371100 Sobic002G371100 Sobic010G013900--Sobic002G371100 Sobic005G027300 Sobic005G027300 Sobic010G013900--Sobic005G027300 Sobic001G481700 Sobic001G481700 Sobic010G013900--Sobic001G481700 Sobic004G248900 Sobic004G248900 Sobic010G013900--Sobic004G248900 Sobic004G002350 Sobic004G002350 Sobic010G013900--Sobic004G002350 Sobic003G196800 Sobic003G196800 Sobic010G013900--Sobic003G196800 Sobic001G117400 Sobic001G117400 Sobic010G013900--Sobic001G117400 Sobic003G028100 Sobic003G028100 Sobic010G013900--Sobic003G028100 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic004G224900 Sobic004G224900 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic002G371100--Sobic001G018800 Sobic008G073300 Sobic008G073300 Sobic002G371100--Sobic008G073300 Sobic002G371100--Sobic001G025600 Sobic002G255100 Sobic002G255100 Sobic002G371100--Sobic002G255100 Sobic002G049300 Sobic002G049300 Sobic002G371100--Sobic002G049300 Sobic002G371100--Sobic004G103700 Sobic003G308000 Sobic003G308000 Sobic002G371100--Sobic003G308000 Sobic002G371100--Sobic004G002350 Sobic009G227400 Sobic009G227400 Sobic002G371100--Sobic009G227400 Sobic005G027300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic005G027300--Sobic001G096100 Sobic008G098800 Sobic008G098800 Sobic005G027300--Sobic008G098800 Sobic009G001900 Sobic009G001900 Sobic005G027300--Sobic009G001900 Sobic004G066800 Sobic004G066800 Sobic005G027300--Sobic004G066800 Sobic001G342200 Sobic001G342200 Sobic005G027300--Sobic001G342200 Sobic005G027300--Sobic001G025600 Sobic005G027300--Sobic001G481700 Sobic005G027300--Sobic001G513500 Sobic001G481700--Sobic001G025600 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic004G248900--Sobic010G013900 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic004G248900--Sobic001G404100 Sobic003G025200 Sobic003G025200 Sobic004G002350--Sobic003G025200 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic006G115000 Sobic006G115000 Sobic004G002350--Sobic006G115000 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic003G196800--Sobic001G096100 Sobic003G196800--Sobic002G341800 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic003G160900 Sobic003G160900 Sobic001G117400--Sobic003G160900 Sobic003G424800 Sobic003G424800 Sobic001G117400--Sobic003G424800 Sobic001G117400--Sobic002G371100 Sobic001G117400--Sobic005G191600 Sobic001G117400--Sobic002G255100 Sobic001G117400--Sobic004G002350 Sobic001G117400--Sobic001G018800 Sobic001G117400--Sobic001G404100 Sobic001G117400--Sobic001G481700 Sobic003G028100--Sobic009G212300 Sobic003G028100--Sobic009G234400 Sobic003G028100--Sobic001G096100 Sobic003G028100--Sobic003G196800 Sobic006G079900 Sobic006G079900 Sobic003G028100--Sobic006G079900 Sobic007G217400 Sobic007G217400 Sobic003G028100--Sobic007G217400 Sobic003G028100--Sobic010G013900 Sobic002G331300 Sobic002G331300 Sobic003G028100--Sobic002G331300 Sobic003G028100--Sobic001G404100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.