Gene annotation
Transcriptome id Sobic.001G491100.1
Synonym Sb01g045930
Functional annotation structural constituent of ribosome, putative, expressed
UniProt C5WWT0
Pfam PF01783
Panther DB PTHR21026 PTHR21026:SF2
NCBI CDD -
KEGG Orthology K02911; RP-L32, MRPL32, large subunit ribosomal protein L32
Gene Ontology GO:0015934; large ribosomal subunit GO:0006412translation GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G26740 : Ribosomal L32p protein family
RAP-DB (Rice) LOC_Os03g07290.1 : structural constituent of ribosome, putative, expressed
MaizeGDB (Corn) Zm00025a000840 , Zm00025a053346
Brachypodium KQK23442
Barley HORVU4Hr1G074800.1 , HORVU4Hr1G074800.2
Wheat TraesCS4A02G019000 , TraesCS4B02G284900
Populus -


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cDNA sequences
Sobic.001G491100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
2 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
3 Sobic.001G481700 eukaryotic translation initiation factor 3 subunit K, putative, expressed K15028: translation initiation factor 3 subunit K
4 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
5 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
6 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
7 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
8 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
9 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
10 Sobic.003G405900 mitochondrial import receptor subunit TOM20, putative, expressed -
11 Sobic.005G027300 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
12 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
13 Sobic.009G045800 bifunctional protein folD, putative, expressed -
14 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
15 Sobic.009G168000 selT-like protein precursor, putative, expressed -
16 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
17 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
18 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
19 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
20 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -


Gene co-expression network
sample Sobic001G491100 Sobic001G491100 Sobic009G174900 Sobic009G174900 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G481700 Sobic001G481700 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic009G004400 Sobic009G004400 Sobic001G491100--Sobic009G004400 Sobic001G502200 Sobic001G502200 Sobic001G491100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G491100--Sobic008G137600 Sobic003G337000 Sobic003G337000 Sobic009G174900--Sobic003G337000 Sobic002G400000 Sobic002G400000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G135600 Sobic009G135600 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic009G174900--Sobic006G212100 Sobic009G174900--Sobic001G491100 Sobic002G134001 Sobic002G134001 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200 Sobic007G045600 Sobic007G045600 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G114200 Sobic007G114200 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic007G019100--Sobic001G342200 Sobic001G481700--Sobic001G025600 Sobic004G224900 Sobic004G224900 Sobic001G481700--Sobic004G224900 Sobic010G100000 Sobic010G100000 Sobic001G481700--Sobic010G100000 Sobic002G341800 Sobic002G341800 Sobic001G481700--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic001G481700--Sobic001G404100 Sobic007G220900 Sobic007G220900 Sobic001G481700--Sobic007G220900 Sobic009G104100 Sobic009G104100 Sobic001G481700--Sobic009G104100 Sobic001G458700 Sobic001G458700 Sobic001G481700--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G481700--Sobic007G176200 Sobic004G103700 Sobic004G103700 Sobic001G025600--Sobic004G103700 Sobic001G172000 Sobic001G172000 Sobic001G025600--Sobic001G172000 Sobic001G025600--Sobic001G481700 Sobic003G129800 Sobic003G129800 Sobic001G025600--Sobic003G129800 Sobic001G513500 Sobic001G513500 Sobic001G025600--Sobic001G513500 Sobic003G442400 Sobic003G442400 Sobic001G025600--Sobic003G442400 Sobic001G025600--Sobic004G224900 Sobic001G018800 Sobic001G018800 Sobic001G025600--Sobic001G018800 Sobic003G287300 Sobic003G287300 Sobic001G025600--Sobic003G287300 Sobic005G027300 Sobic005G027300 Sobic003G196800--Sobic005G027300 Sobic009G212300 Sobic009G212300 Sobic003G196800--Sobic009G212300 Sobic001G096100 Sobic001G096100 Sobic003G196800--Sobic001G096100 Sobic003G196800--Sobic002G341800 Sobic003G196800--Sobic001G481700 Sobic010G114700 Sobic010G114700 Sobic003G196800--Sobic010G114700 Sobic009G234400 Sobic009G234400 Sobic003G196800--Sobic009G234400 Sobic006G002201 Sobic006G002201 Sobic003G196800--Sobic006G002201 Sobic007G061400 Sobic007G061400 Sobic003G196800--Sobic007G061400 Sobic004G300900 Sobic004G300900 Sobic002G078400--Sobic004G300900 Sobic010G065400 Sobic010G065400 Sobic002G078400--Sobic010G065400 Sobic003G362400 Sobic003G362400 Sobic002G078400--Sobic003G362400 Sobic007G091000 Sobic007G091000 Sobic002G078400--Sobic007G091000 Sobic008G132800 Sobic008G132800 Sobic002G078400--Sobic008G132800 Sobic001G445800 Sobic001G445800 Sobic002G078400--Sobic001G445800 Sobic001G331900 Sobic001G331900 Sobic002G078400--Sobic001G331900 Sobic009G198500 Sobic009G198500 Sobic002G078400--Sobic009G198500 Sobic010G029400 Sobic010G029400 Sobic002G078400--Sobic010G029400 Sobic010G205300 Sobic010G205300 Sobic009G004400--Sobic010G205300 Sobic009G004400--Sobic001G491100 Sobic007G014900 Sobic007G014900 Sobic009G004400--Sobic007G014900 Sobic004G212500 Sobic004G212500 Sobic009G004400--Sobic004G212500 Sobic001G294900 Sobic001G294900 Sobic009G004400--Sobic001G294900 Sobic009G004400--Sobic008G137600 Sobic009G004400--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic009G004400--Sobic004G194900 Sobic009G004400--Sobic009G212300 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic008G137600--Sobic002G341800 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200
Octagon: transcription factors


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