Gene annotation
Transcriptome id Sobic.001G467300.2,Sobic.001G467300.3
Synonym
Functional annotation 40S ribosomal protein S3a, putative, expressed
UniProt A0A1B6QPU3
Pfam PF01015
Panther DB PTHR11830
NCBI CDD KOG1628; 40S ribosomal protein S3A
KEGG Orthology K02984; RP-S3Ae, small subunit ribosomal protein S3Ae
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT4G34670 : Ribosomal protein S3Ae
RAP-DB (Rice) LOC_Os02g18550.1 : 40S ribosomal protein S3a, putative, expressed
MaizeGDB (Corn) Zm00025a001174 , Zm00025a053152
Brachypodium KQK23087
Barley HORVU1Hr1G032060.4 , HORVU1Hr1G032060.5 , HORVU1Hr1G032060.6 , HORVU1Hr1G032060.7 , HORVU1Hr1G032060.1 , HORVU1Hr1G032060.2 , HORVU1Hr1G032060.3
Wheat -
Populus -


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cDNA sequences
Sobic.001G467300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G065400 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
2 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
3 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
4 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
5 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
6 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
7 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
8 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
9 Sobic.008G004000 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
10 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
11 Sobic.010G251100 - K03257: translation initiation factor 4A
12 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
13 Sobic.006G220700 signal recognition particle 14 kDa protein, putative, expressed K03104: signal recognition particle subunit SRP14
14 Sobic.008G132800 expressed protein -
15 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
16 Sobic.006G242300 - -
17 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
18 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
19 Sobic.001G331900 expressed protein -
20 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G467300 Sobic001G467300 Sobic009G065400 Sobic009G065400 Sobic001G467300--Sobic009G065400 Sobic001G402300 Sobic001G402300 Sobic001G467300--Sobic001G402300 Sobic002G413400 Sobic002G413400 Sobic001G467300--Sobic002G413400 Sobic001G073000 Sobic001G073000 Sobic001G467300--Sobic001G073000 Sobic001G216200 Sobic001G216200 Sobic001G467300--Sobic001G216200 Sobic001G491100 Sobic001G491100 Sobic001G467300--Sobic001G491100 Sobic003G248600 Sobic003G248600 Sobic001G467300--Sobic003G248600 Sobic010G173100 Sobic010G173100 Sobic001G467300--Sobic010G173100 Sobic008G004000 Sobic008G004000 Sobic001G467300--Sobic008G004000 Sobic001G046300 Sobic001G046300 Sobic009G065400--Sobic001G046300 Sobic010G182600 Sobic010G182600 Sobic009G065400--Sobic010G182600 Sobic003G025200 Sobic003G025200 Sobic009G065400--Sobic003G025200 Sobic001G011200 Sobic001G011200 Sobic009G065400--Sobic001G011200 Sobic002G364100 Sobic002G364100 Sobic009G065400--Sobic002G364100 Sobic001G377800 Sobic001G377800 Sobic009G065400--Sobic001G377800 Sobic002G259000 Sobic002G259000 Sobic009G065400--Sobic002G259000 Sobic002G374900 Sobic002G374900 Sobic009G065400--Sobic002G374900 Sobic010G182300 Sobic010G182300 Sobic009G065400--Sobic010G182300 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic002G413400--Sobic001G402300 Sobic009G232000 Sobic009G232000 Sobic002G413400--Sobic009G232000 Sobic009G008600 Sobic009G008600 Sobic002G413400--Sobic009G008600 Sobic010G100000 Sobic010G100000 Sobic002G413400--Sobic010G100000 Sobic006G222400 Sobic006G222400 Sobic002G413400--Sobic006G222400 Sobic003G424800 Sobic003G424800 Sobic002G413400--Sobic003G424800 Sobic001G126200 Sobic001G126200 Sobic002G413400--Sobic001G126200 Sobic001G513500 Sobic001G513500 Sobic002G413400--Sobic001G513500 Sobic008G130400 Sobic008G130400 Sobic002G413400--Sobic008G130400 Sobic009G228800 Sobic009G228800 Sobic001G073000--Sobic009G228800 Sobic010G083700 Sobic010G083700 Sobic001G073000--Sobic010G083700 Sobic001G007200 Sobic001G007200 Sobic001G073000--Sobic001G007200 Sobic001G415500 Sobic001G415500 Sobic001G073000--Sobic001G415500 Sobic007G186300 Sobic007G186300 Sobic001G073000--Sobic007G186300 Sobic001G054200 Sobic001G054200 Sobic001G073000--Sobic001G054200 Sobic009G246950 Sobic009G246950 Sobic001G073000--Sobic009G246950 Sobic010G253800 Sobic010G253800 Sobic001G073000--Sobic010G253800 Sobic001G073000--Sobic003G248600 Sobic008G058300 Sobic008G058300 Sobic001G216200--Sobic008G058300 Sobic001G216200--Sobic007G186300 Sobic001G216200--Sobic008G004000 Sobic001G216200--Sobic003G248600 Sobic004G300900 Sobic004G300900 Sobic001G216200--Sobic004G300900 Sobic001G216200--Sobic001G415500 Sobic001G216200--Sobic001G402300 Sobic001G216200--Sobic001G054200 Sobic004G107600 Sobic004G107600 Sobic001G216200--Sobic004G107600 Sobic009G174900 Sobic009G174900 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G481700 Sobic001G481700 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic009G004400 Sobic009G004400 Sobic001G491100--Sobic009G004400 Sobic001G502200 Sobic001G502200 Sobic001G491100--Sobic001G502200 Sobic001G491100--Sobic008G137600 Sobic003G220600 Sobic003G220600 Sobic003G248600--Sobic003G220600 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic004G321900 Sobic004G321900 Sobic003G248600--Sobic004G321900 Sobic001G403700 Sobic001G403700 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic003G248600--Sobic001G073000 Sobic002G263800 Sobic002G263800 Sobic010G173100--Sobic002G263800 Sobic002G373800 Sobic002G373800 Sobic010G173100--Sobic002G373800 Sobic003G107600 Sobic003G107600 Sobic010G173100--Sobic003G107600 Sobic010G173100--Sobic010G182600 Sobic010G173100--Sobic009G065400 Sobic008G161800 Sobic008G161800 Sobic010G173100--Sobic008G161800 Sobic002G406500 Sobic002G406500 Sobic010G173100--Sobic002G406500 Sobic010G173100--Sobic001G011200 Sobic010G173100--Sobic001G046300 Sobic005G003800 Sobic005G003800 Sobic008G004000--Sobic005G003800 Sobic008G004000--Sobic009G232000 Sobic009G190300 Sobic009G190300 Sobic008G004000--Sobic009G190300 Sobic008G004000--Sobic009G065400 Sobic001G018800 Sobic001G018800 Sobic008G004000--Sobic001G018800 Sobic008G004000--Sobic001G011200 Sobic008G004000--Sobic001G216200 Sobic008G004000--Sobic010G100000 Sobic002G364500 Sobic002G364500 Sobic008G004000--Sobic002G364500
Octagon: transcription factors


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