Gene annotation
Transcriptome id Sobic.010G251100.1
Synonym TIF4A1, RH4, Sb10g028940, EIF4A1
Functional annotation -
UniProt A0A1W0VUR3
Pfam PF04851 PF00271
Panther DB PTHR24031 PTHR24031:SF294
NCBI CDD -
KEGG Orthology K03257; translation initiation factor 4A
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G13920 : eukaryotic translation initiation factor 4A1
RAP-DB (Rice) LOC_Os02g05330.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a018969 , Zm00025a018360 , Zm00025a041779
Brachypodium KQK17395 , KQK17396 , KQJ93299 , PNT65866
Barley HORVU6Hr1G020910.1 , HORVU6Hr1G020910.2 , HORVU6Hr1G020910.3
Wheat TraesCS7B02G320000 , TraesCS6B02G144000 , TraesCS6B02G144000 , TraesCS7D02G412200 , TraesCS6D02G105000 , TraesCS7A02G419400 , TraesCS6A02G116200
Populus -


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cDNA sequences
Sobic.010G251100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
2 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
3 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
4 Sobic.009G232400 expressed protein -
5 Sobic.007G205000 zinc finger family protein, putative, expressed -
6 Sobic.008G004400 GIL1, putative, expressed -
7 Sobic.006G278700 expressed protein -
8 Sobic.010G012600 expressed protein -
9 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
11 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
12 Sobic.001G186100 RNA recognition motif containing protein, putative, expressed -
13 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
14 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
15 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
16 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
17 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
18 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
20 Sobic.004G185600 expressed protein -


Gene co-expression network
sample Sobic010G251100 Sobic010G251100 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic001G402300 Sobic001G402300 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800 Sobic001G226100--Sobic010G251100 Sobic001G226100--Sobic001G402300 Sobic004G141700 Sobic004G141700 Sobic001G226100--Sobic004G141700 Sobic001G226100--Sobic009G232400 Sobic002G306400 Sobic002G306400 Sobic001G226100--Sobic002G306400 Sobic007G118000 Sobic007G118000 Sobic001G226100--Sobic007G118000 Sobic006G252100 Sobic006G252100 Sobic001G226100--Sobic006G252100 Sobic001G512600 Sobic001G512600 Sobic001G226100--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic001G226100--Sobic001G054200 Sobic008G137600 Sobic008G137600 Sobic001G402300--Sobic008G137600 Sobic001G402300--Sobic001G226100 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic001G402300--Sobic007G118000 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G285300 Sobic001G285300 Sobic001G402300--Sobic001G285300 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic010G083700 Sobic010G083700 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic003G226500--Sobic001G512600 Sobic003G226500--Sobic001G054200 Sobic009G232400--Sobic004G141700 Sobic009G232400--Sobic001G402300 Sobic009G232400--Sobic003G350600 Sobic009G232400--Sobic001G226100 Sobic001G007200 Sobic001G007200 Sobic009G232400--Sobic001G007200 Sobic009G232400--Sobic010G083700 Sobic009G232400--Sobic010G251100 Sobic009G232400--Sobic001G054200 Sobic009G232400--Sobic007G118000 Sobic001G028400 Sobic001G028400 Sobic007G205000--Sobic001G028400 Sobic007G205000--Sobic006G278700 Sobic007G118200 Sobic007G118200 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic004G350100 Sobic004G350100 Sobic007G205000--Sobic004G350100 Sobic004G356900 Sobic004G356900 Sobic008G004400--Sobic004G356900 Sobic008G004400--Sobic006G278700 Sobic001G143500 Sobic001G143500 Sobic008G004400--Sobic001G143500 Sobic007G053500 Sobic007G053500 Sobic008G004400--Sobic007G053500 Sobic006G101700 Sobic006G101700 Sobic008G004400--Sobic006G101700 Sobic003G439800 Sobic003G439800 Sobic008G004400--Sobic003G439800 Sobic002G281300 Sobic002G281300 Sobic008G004400--Sobic002G281300 Sobic005G004200 Sobic005G004200 Sobic008G004400--Sobic005G004200 Sobic001G360200 Sobic001G360200 Sobic008G004400--Sobic001G360200 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic006G278700--Sobic007G205000 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic006G278700--Sobic007G118200 Sobic006G278700--Sobic008G004400 Sobic010G012600--Sobic010G251100 Sobic003G024800 Sobic003G024800 Sobic010G012600--Sobic003G024800 Sobic010G012600--Sobic001G512600 Sobic006G242300 Sobic006G242300 Sobic010G012600--Sobic006G242300 Sobic004G057800 Sobic004G057800 Sobic010G012600--Sobic004G057800 Sobic008G142700 Sobic008G142700 Sobic010G012600--Sobic008G142700 Sobic001G080000 Sobic001G080000 Sobic010G012600--Sobic001G080000 Sobic010G012600--Sobic007G205000 Sobic001G309100 Sobic001G309100 Sobic010G012600--Sobic001G309100 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950
Octagon: transcription factors


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