Gene annotation
Transcriptome id Sobic.010G146600.1,Sobic.010G146600.2
Synonym 1, CAK1AT, Sb10g019630, CDKF
Functional annotation cyclin-dependent kinase F-1, putative, expressed
UniProt C5Z357 , A0A1W0VT39
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF171
NCBI CDD KOG0594; Protein kinase PCTAIRE and related kinases KOG0659Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 KOG0659Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G28980 : CDK-activating kinase 1AT
RAP-DB (Rice) LOC_Os06g22820.1 : cyclin-dependent kinase F-1, putative, expressed
MaizeGDB (Corn) Zm00025a042385
Brachypodium KQK18240
Barley HORVU7Hr1G080980.1 , HORVU7Hr1G080980.2 , HORVU7Hr1G080980.3 , HORVU7Hr1G080980.4 , HORVU7Hr1G080980.5
Wheat TraesCS7A02G342900 , TraesCS7B02G240100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G249300 Ser/Thr protein phosphatase family protein, putative, expressed -
2 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
3 Sobic.004G185600 expressed protein -
4 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
5 Sobic.002G317300 CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
6 Sobic.001G291100 tetraspanin family protein, putative, expressed -
7 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
8 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.010G251100 - K03257: translation initiation factor 4A
10 Sobic.001G057200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.002G306400 zinc finger family protein, putative, expressed -
12 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
13 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
14 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
15 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
16 Sobic.006G242300 - -
17 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
18 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
19 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
20 Sobic.002G268400 expressed protein -


Gene co-expression network
sample Sobic010G146600 Sobic010G146600 Sobic010G249300 Sobic010G249300 Sobic010G146600--Sobic010G249300 Sobic003G119400 Sobic003G119400 Sobic010G146600--Sobic003G119400 Sobic004G185600 Sobic004G185600 Sobic010G146600--Sobic004G185600 Sobic003G250500 Sobic003G250500 Sobic010G146600--Sobic003G250500 Sobic002G317300 Sobic002G317300 Sobic010G146600--Sobic002G317300 Sobic001G291100 Sobic001G291100 Sobic010G146600--Sobic001G291100 Sobic001G281600 Sobic001G281600 Sobic010G146600--Sobic001G281600 Sobic009G133400 Sobic009G133400 Sobic010G146600--Sobic009G133400 Sobic010G251100 Sobic010G251100 Sobic010G146600--Sobic010G251100 Sobic010G249300--Sobic004G185600 Sobic010G249300--Sobic010G146600 Sobic010G249300--Sobic002G317300 Sobic008G083000 Sobic008G083000 Sobic010G249300--Sobic008G083000 Sobic010G249300--Sobic001G291100 Sobic010G249300--Sobic001G281600 Sobic006G047100 Sobic006G047100 Sobic010G249300--Sobic006G047100 Sobic001G464100 Sobic001G464100 Sobic010G249300--Sobic001G464100 Sobic009G050900 Sobic009G050900 Sobic010G249300--Sobic009G050900 Sobic004G074300 Sobic004G074300 Sobic003G119400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic003G119400--Sobic001G041200 Sobic002G259400 Sobic002G259400 Sobic003G119400--Sobic002G259400 Sobic003G119400--Sobic010G146600 Sobic006G216000 Sobic006G216000 Sobic003G119400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic002G268400 Sobic002G268400 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic004G185600--Sobic010G249300 Sobic001G201400 Sobic001G201400 Sobic004G185600--Sobic001G201400 Sobic004G185600--Sobic010G146600 Sobic004G185600--Sobic001G281600 Sobic004G185600--Sobic009G050900 Sobic004G185600--Sobic001G291100 Sobic002G378200 Sobic002G378200 Sobic004G185600--Sobic002G378200 Sobic008G004400 Sobic008G004400 Sobic004G185600--Sobic008G004400 Sobic001G142100 Sobic001G142100 Sobic004G185600--Sobic001G142100 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic009G199200 Sobic009G199200 Sobic002G317300--Sobic009G199200 Sobic002G317300--Sobic010G249300 Sobic002G317300--Sobic010G146600 Sobic002G317300--Sobic001G281600 Sobic006G032900 Sobic006G032900 Sobic002G317300--Sobic006G032900 Sobic002G166300 Sobic002G166300 Sobic002G317300--Sobic002G166300 Sobic002G317300--Sobic008G083000 Sobic007G067700 Sobic007G067700 Sobic002G317300--Sobic007G067700 Sobic010G279700 Sobic010G279700 Sobic002G317300--Sobic010G279700 Sobic009G157200 Sobic009G157200 Sobic001G291100--Sobic009G157200 Sobic001G291100--Sobic001G281600 Sobic004G119000 Sobic004G119000 Sobic001G291100--Sobic004G119000 Sobic010G056200 Sobic010G056200 Sobic001G291100--Sobic010G056200 Sobic001G291100--Sobic001G119300 Sobic004G150400 Sobic004G150400 Sobic001G291100--Sobic004G150400 Sobic001G107500 Sobic001G107500 Sobic001G291100--Sobic001G107500 Sobic006G088100 Sobic006G088100 Sobic001G291100--Sobic006G088100 Sobic004G083700 Sobic004G083700 Sobic001G291100--Sobic004G083700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic004G356900 Sobic004G356900 Sobic009G133400--Sobic004G356900 Sobic009G133400--Sobic006G242300 Sobic009G133400--Sobic010G146600 Sobic004G348100 Sobic004G348100 Sobic009G133400--Sobic004G348100 Sobic009G133400--Sobic004G301900 Sobic010G247400 Sobic010G247400 Sobic009G133400--Sobic010G247400 Sobic009G133400--Sobic010G251100 Sobic009G133400--Sobic001G512600 Sobic007G203700 Sobic007G203700 Sobic009G133400--Sobic007G203700 Sobic001G226100 Sobic001G226100 Sobic010G251100--Sobic001G226100 Sobic001G402300 Sobic001G402300 Sobic010G251100--Sobic001G402300 Sobic010G251100--Sobic003G226500 Sobic009G232400 Sobic009G232400 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G193800 Sobic010G193800 Sobic010G251100--Sobic010G193800
Octagon: transcription factors


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