Gene annotation
Transcriptome id Sobic.001G428400.1
Synonym Sb01g040250
Functional annotation -
UniProt C5WQ64
Pfam PF12874 PF16835
Panther DB PTHR23205 PTHR23205:SF0
NCBI CDD KOG0227; Splicing factor 3a, subunit 2
KEGG Orthology K12826; SF3A2, splicing factor 3A subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32600 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a001705 , Zm00025a052814
Brachypodium KQK22456
Barley HORVU4Hr1G061270.1
Wheat TraesCS4A02G088700 , TraesCS4D02G216000 , TraesCS4B02G215500
Populus -


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cDNA sequences
Sobic.001G428400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G077000 expressed protein -
2 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
4 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
5 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
6 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
7 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
8 Sobic.009G117400 protein kinase domain containing protein, expressed -
9 Sobic.008G136000 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
10 Sobic.009G225200 expressed protein -
11 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
12 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
13 Sobic.010G042900 expressed protein -
14 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
16 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
17 Sobic.004G271900 RMD5 homolog A, putative, expressed -
18 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
19 Sobic.003G093600 methyltransferase, putative, expressed -
20 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2


Gene co-expression network
sample Sobic001G428400 Sobic001G428400 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic009G117300 Sobic009G117300 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic004G006300 Sobic004G006300 Sobic001G428400--Sobic004G006300 Sobic008G034600 Sobic008G034600 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic009G117400 Sobic009G117400 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000 Sobic005G229000 Sobic005G229000 Sobic004G077000--Sobic005G229000 Sobic004G077000--Sobic001G428400 Sobic002G362300 Sobic002G362300 Sobic004G077000--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic004G077000--Sobic003G442000 Sobic004G077000--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic005G009200 Sobic005G009200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic009G117300--Sobic009G117400 Sobic004G271900 Sobic004G271900 Sobic009G117300--Sobic004G271900 Sobic009G117300--Sobic009G225200 Sobic010G263800 Sobic010G263800 Sobic009G117300--Sobic010G263800 Sobic004G057400 Sobic004G057400 Sobic009G117300--Sobic004G057400 Sobic009G117300--Sobic008G034600 Sobic006G209500 Sobic006G209500 Sobic009G117300--Sobic006G209500 Sobic004G256600 Sobic004G256600 Sobic009G117300--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic009G117300--Sobic007G205800 Sobic004G211400--Sobic008G034600 Sobic009G022200 Sobic009G022200 Sobic004G211400--Sobic009G022200 Sobic004G211400--Sobic007G205800 Sobic004G211400--Sobic002G157200 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic003G258400 Sobic003G258400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic004G211400--Sobic001G428400 Sobic001G039700--Sobic008G034600 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic003G440700 Sobic003G440700 Sobic001G039700--Sobic003G440700 Sobic001G039700--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G221100 Sobic001G221100 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic009G178600 Sobic009G178600 Sobic004G006300--Sobic009G178600 Sobic004G006300--Sobic009G117300 Sobic006G254700 Sobic006G254700 Sobic004G006300--Sobic006G254700 Sobic004G006300--Sobic006G209500 Sobic004G348100 Sobic004G348100 Sobic004G006300--Sobic004G348100 Sobic004G006300--Sobic001G428400 Sobic004G006300--Sobic009G117400 Sobic001G111366 Sobic001G111366 Sobic004G006300--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic004G006300--Sobic001G028700 Sobic008G034600--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic003G043100--Sobic001G428400 Sobic003G043100--Sobic009G178600 Sobic006G242300 Sobic006G242300 Sobic003G043100--Sobic006G242300 Sobic003G043100--Sobic004G077000 Sobic001G429400 Sobic001G429400 Sobic003G043100--Sobic001G429400 Sobic001G083600 Sobic001G083600 Sobic003G043100--Sobic001G083600 Sobic004G072800 Sobic004G072800 Sobic003G043100--Sobic004G072800 Sobic003G043100--Sobic004G006300 Sobic001G390500 Sobic001G390500 Sobic003G043100--Sobic001G390500 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic008G136000--Sobic001G428400 Sobic002G270300 Sobic002G270300 Sobic008G136000--Sobic002G270300 Sobic003G024800 Sobic003G024800 Sobic008G136000--Sobic003G024800 Sobic003G328800 Sobic003G328800 Sobic008G136000--Sobic003G328800 Sobic004G349100 Sobic004G349100 Sobic008G136000--Sobic004G349100 Sobic008G136000--Sobic004G077000 Sobic001G512600 Sobic001G512600 Sobic008G136000--Sobic001G512600 Sobic001G420700 Sobic001G420700 Sobic008G136000--Sobic001G420700 Sobic010G163900 Sobic010G163900 Sobic008G136000--Sobic010G163900
Octagon: transcription factors


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