Gene annotation
Transcriptome id Sobic.004G006300.2
Synonym Sb04g000750, TCTP
Functional annotation translationally-controlled tumor protein, putative, expressed
UniProt A0A1Z5RK96
Pfam PF00838
Panther DB PTHR11991
NCBI CDD KOG1727; Microtubule-binding protein (translationally controlled tumor protein)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16640 : translationally controlled tumor protein
RAP-DB (Rice) LOC_Os11g43900.1 : translationally-controlled tumor protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G006300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G178600 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
2 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
4 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
5 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
6 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
7 Sobic.009G117400 protein kinase domain containing protein, expressed -
8 Sobic.001G111366 - -
9 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
11 Sobic.001G111500 far-red light perception and signal transduction(PubMedID : 14963106)@phytochrome A, putative, expressed K12120: phytochrome A
12 Sobic.010G042900 expressed protein -
13 Sobic.001G154100 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
14 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
15 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
16 Sobic.004G271900 RMD5 homolog A, putative, expressed -
17 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
18 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
19 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
20 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37


Gene co-expression network
sample Sobic004G006300 Sobic004G006300 Sobic009G178600 Sobic009G178600 Sobic004G006300--Sobic009G178600 Sobic009G117300 Sobic009G117300 Sobic004G006300--Sobic009G117300 Sobic006G254700 Sobic006G254700 Sobic004G006300--Sobic006G254700 Sobic006G209500 Sobic006G209500 Sobic004G006300--Sobic006G209500 Sobic004G348100 Sobic004G348100 Sobic004G006300--Sobic004G348100 Sobic001G428400 Sobic001G428400 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic001G111366 Sobic001G111366 Sobic004G006300--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic004G006300--Sobic001G028700 Sobic009G178600--Sobic004G006300 Sobic001G083600 Sobic001G083600 Sobic009G178600--Sobic001G083600 Sobic008G128600 Sobic008G128600 Sobic009G178600--Sobic008G128600 Sobic003G202800 Sobic003G202800 Sobic009G178600--Sobic003G202800 Sobic010G190600 Sobic010G190600 Sobic009G178600--Sobic010G190600 Sobic002G010300 Sobic002G010300 Sobic009G178600--Sobic002G010300 Sobic004G283000 Sobic004G283000 Sobic009G178600--Sobic004G283000 Sobic004G034400 Sobic004G034400 Sobic009G178600--Sobic004G034400 Sobic009G178600--Sobic006G209500 Sobic009G117300--Sobic009G117400 Sobic004G271900 Sobic004G271900 Sobic009G117300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic009G117300--Sobic009G225200 Sobic010G263800 Sobic010G263800 Sobic009G117300--Sobic010G263800 Sobic004G057400 Sobic004G057400 Sobic009G117300--Sobic004G057400 Sobic008G034600 Sobic008G034600 Sobic009G117300--Sobic008G034600 Sobic009G117300--Sobic006G209500 Sobic004G256600 Sobic004G256600 Sobic009G117300--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic009G117300--Sobic007G205800 Sobic002G087900 Sobic002G087900 Sobic006G254700--Sobic002G087900 Sobic006G254700--Sobic004G006300 Sobic006G254700--Sobic006G209500 Sobic002G395801 Sobic002G395801 Sobic006G254700--Sobic002G395801 Sobic003G226500 Sobic003G226500 Sobic006G254700--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic006G254700--Sobic004G253000 Sobic006G254700--Sobic004G348100 Sobic007G186300 Sobic007G186300 Sobic006G254700--Sobic007G186300 Sobic001G478300 Sobic001G478300 Sobic006G254700--Sobic001G478300 Sobic006G209500--Sobic001G478300 Sobic006G209500--Sobic004G271900 Sobic006G088100 Sobic006G088100 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic006G209500--Sobic007G205800 Sobic004G348100--Sobic004G006300 Sobic004G348100--Sobic009G225200 Sobic004G348100--Sobic009G117300 Sobic009G133400 Sobic009G133400 Sobic004G348100--Sobic009G133400 Sobic003G084700 Sobic003G084700 Sobic004G348100--Sobic003G084700 Sobic006G252300 Sobic006G252300 Sobic004G348100--Sobic006G252300 Sobic004G348100--Sobic006G254700 Sobic004G348100--Sobic002G395801 Sobic004G348100--Sobic001G428400 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic001G428400--Sobic004G006300 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic001G347600 Sobic001G347600 Sobic009G117400--Sobic001G347600 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic001G111500 Sobic001G111500 Sobic001G111366--Sobic001G111500 Sobic001G111366--Sobic001G028700 Sobic001G111366--Sobic004G006300 Sobic009G235900 Sobic009G235900 Sobic001G111366--Sobic009G235900 Sobic010G042900 Sobic010G042900 Sobic001G111366--Sobic010G042900 Sobic001G154100 Sobic001G154100 Sobic001G111366--Sobic001G154100 Sobic001G111366--Sobic004G256600 Sobic004G153400 Sobic004G153400 Sobic001G111366--Sobic004G153400 Sobic010G001600 Sobic010G001600 Sobic001G111366--Sobic010G001600 Sobic001G028700--Sobic001G111366 Sobic001G028700--Sobic001G111500 Sobic004G297400 Sobic004G297400 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic001G028700--Sobic009G235900 Sobic001G028700--Sobic004G006300 Sobic001G028700--Sobic004G034400 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.