Gene annotation
Transcriptome id Sobic.006G254700.1
Synonym Sb06g031860
Functional annotation PHF5-like protein domain containing protein, expressed
UniProt -
Pfam PF03660
Panther DB PTHR13120
NCBI CDD KOG1705; Uncharacterized conserved protein, contains CXXC motifs
KEGG Orthology K12834; PHD finger-like domain-containing protein 5A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30000 : PHF5-like protein
RAP-DB (Rice) LOC_Os04g56760.1 : PHF5-like protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009419
Brachypodium KQJ85140 , KQJ85139 , KQK17722
Barley HORVU2Hr1G109760.1 , HORVU7Hr1G090790.1 , HORVU7Hr1G090790.2 , HORVU7Hr1G090790.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
2 Sobic.004G006300 translationally-controlled tumor protein, putative, expressed -
3 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
4 Sobic.002G395801 - -
5 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
6 Sobic.004G253000 AGAP000425-PA, putative, expressed K13120: protein FAM32A
7 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
8 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
10 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
11 Sobic.010G058500 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
12 Sobic.009G178600 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
13 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
14 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
15 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
16 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
17 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
18 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
19 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
20 Sobic.001G054200 green ripe-like, putative, expressed -


Gene co-expression network
sample Sobic006G254700 Sobic006G254700 Sobic002G087900 Sobic002G087900 Sobic006G254700--Sobic002G087900 Sobic004G006300 Sobic004G006300 Sobic006G254700--Sobic004G006300 Sobic006G209500 Sobic006G209500 Sobic006G254700--Sobic006G209500 Sobic002G395801 Sobic002G395801 Sobic006G254700--Sobic002G395801 Sobic003G226500 Sobic003G226500 Sobic006G254700--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic006G254700--Sobic004G253000 Sobic004G348100 Sobic004G348100 Sobic006G254700--Sobic004G348100 Sobic007G186300 Sobic007G186300 Sobic006G254700--Sobic007G186300 Sobic001G478300 Sobic001G478300 Sobic006G254700--Sobic001G478300 Sobic002G010300 Sobic002G010300 Sobic002G087900--Sobic002G010300 Sobic002G087900--Sobic002G395801 Sobic010G083700 Sobic010G083700 Sobic002G087900--Sobic010G083700 Sobic002G087900--Sobic006G254700 Sobic004G104900 Sobic004G104900 Sobic002G087900--Sobic004G104900 Sobic002G256300 Sobic002G256300 Sobic002G087900--Sobic002G256300 Sobic009G259400 Sobic009G259400 Sobic002G087900--Sobic009G259400 Sobic002G087900--Sobic003G226500 Sobic010G018700 Sobic010G018700 Sobic002G087900--Sobic010G018700 Sobic009G178600 Sobic009G178600 Sobic004G006300--Sobic009G178600 Sobic009G117300 Sobic009G117300 Sobic004G006300--Sobic009G117300 Sobic004G006300--Sobic006G254700 Sobic004G006300--Sobic006G209500 Sobic004G006300--Sobic004G348100 Sobic001G428400 Sobic001G428400 Sobic004G006300--Sobic001G428400 Sobic009G117400 Sobic009G117400 Sobic004G006300--Sobic009G117400 Sobic001G111366 Sobic001G111366 Sobic004G006300--Sobic001G111366 Sobic001G028700 Sobic001G028700 Sobic004G006300--Sobic001G028700 Sobic006G209500--Sobic001G478300 Sobic004G271900 Sobic004G271900 Sobic006G209500--Sobic004G271900 Sobic006G088100 Sobic006G088100 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic007G205800 Sobic007G205800 Sobic006G209500--Sobic007G205800 Sobic002G395801--Sobic009G259400 Sobic002G395801--Sobic002G087900 Sobic008G179700 Sobic008G179700 Sobic002G395801--Sobic008G179700 Sobic002G395801--Sobic010G018700 Sobic002G395801--Sobic010G083700 Sobic002G395801--Sobic002G010300 Sobic009G205200 Sobic009G205200 Sobic002G395801--Sobic009G205200 Sobic002G132300 Sobic002G132300 Sobic002G395801--Sobic002G132300 Sobic002G395801--Sobic006G254700 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic001G512600 Sobic001G512600 Sobic003G226500--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic003G226500--Sobic001G054200 Sobic003G050600 Sobic003G050600 Sobic004G253000--Sobic003G050600 Sobic004G253000--Sobic010G083700 Sobic001G098200 Sobic001G098200 Sobic004G253000--Sobic001G098200 Sobic003G015900 Sobic003G015900 Sobic004G253000--Sobic003G015900 Sobic004G253000--Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic004G253000--Sobic004G059000 Sobic001G051200 Sobic001G051200 Sobic004G253000--Sobic001G051200 Sobic009G246950 Sobic009G246950 Sobic004G253000--Sobic009G246950 Sobic003G000800 Sobic003G000800 Sobic004G253000--Sobic003G000800 Sobic004G348100--Sobic004G006300 Sobic009G225200 Sobic009G225200 Sobic004G348100--Sobic009G225200 Sobic004G348100--Sobic009G117300 Sobic009G133400 Sobic009G133400 Sobic004G348100--Sobic009G133400 Sobic003G084700 Sobic003G084700 Sobic004G348100--Sobic003G084700 Sobic006G252300 Sobic006G252300 Sobic004G348100--Sobic006G252300 Sobic004G348100--Sobic006G254700 Sobic004G348100--Sobic002G395801 Sobic004G348100--Sobic001G428400 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G149700 Sobic001G149700 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700
Octagon: transcription factors


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