Gene annotation
Transcriptome id Sobic.002G010300.1
Synonym Sb02g001110, ATCKA1, CKA1, HD6, HEADING DATE 6
Functional annotation photoperiodic flowering time gene (PubMedID : 22394582)
casein kinase II subunit alpha-2, putative, expressed
UniProt C5X7B1 , I3RGW2
Pfam PF07714
Panther DB PTHR24054 PTHR24054:SF32
NCBI CDD -
KEGG Orthology K03097; casein kinase II subunit alpha
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G67380 : casein kinase alpha 1
RAP-DB (Rice) LOC_Os07g02350.1 : casein kinase II subunit alpha-2, putative, expressed
MaizeGDB (Corn) Zm00025a008276 , Zm00025a008261 , Zm00025a016239 , Zm00025a016747 , Zm00025a044896
Brachypodium KQK21155 , KQK13063
Barley HORVU2Hr1G063420.9 , HORVU2Hr1G063420.8 , HORVU2Hr1G063420.1 , HORVU2Hr1G063420.3 , HORVU2Hr1G063420.2 , HORVU2Hr1G063420.5 , HORVU2Hr1G063420.4 , HORVU2Hr1G063420.7 , HORVU2Hr1G063420.6 , HORVU5Hr1G097230.5 , HORVU5Hr1G097230.1 , HORVU2Hr1G063420.11 , HORVU2Hr1G063420.10 , HORVU5Hr1G097400.3 , HORVU5Hr1G097400.2 , HORVU5Hr1G097400.1
Wheat TraesCS2A02G263400 , TraesCS2A02G263400 , TraesCS2B02G278700 , TraesCS2B02G278700 , TraesCS2B02G278700 , TraesCS2B02G278700 , TraesCS2D02G260500 , TraesCS2D02G260500 , TraesCS5B02G404900 , TraesCS5B02G405700 , TraesCS5A02G400100 , TraesCS5D02G410000 , TraesCS5D02G411100 , TraesCS5A02G400900
Populus -


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cDNA sequences
Sobic.002G010300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
2 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
3 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
4 Sobic.009G198100 expressed protein -
5 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
6 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
7 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
8 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.002G200100 AGAP000554-PA, putative, expressed -
10 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
11 Sobic.004G205600 bromodomain domain containing protein, expressed -
12 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
13 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
14 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
15 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
16 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
17 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
18 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.002G090800 expressed protein -
20 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5


Gene co-expression network
sample Sobic002G010300 Sobic002G010300 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic007G026300--Sobic004G021100 Sobic004G205600 Sobic004G205600 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic001G090400--Sobic006G173100 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic008G174300 Sobic008G174300 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic004G066200 Sobic004G066200 Sobic001G356600--Sobic004G066200 Sobic003G248200 Sobic003G248200 Sobic001G356600--Sobic003G248200 Sobic001G356600--Sobic002G034600 Sobic001G356600--Sobic001G512700 Sobic009G228700 Sobic009G228700 Sobic001G356600--Sobic009G228700 Sobic009G179700 Sobic009G179700 Sobic001G356600--Sobic009G179700 Sobic010G018700 Sobic010G018700 Sobic001G356600--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic001G356600--Sobic008G179700 Sobic001G356600--Sobic004G274200 Sobic002G200100--Sobic006G173100 Sobic001G119300 Sobic001G119300 Sobic002G200100--Sobic001G119300 Sobic002G200100--Sobic004G021100 Sobic002G200100--Sobic002G010300 Sobic002G200100--Sobic004G350100 Sobic002G200100--Sobic004G007300 Sobic002G200100--Sobic004G205600 Sobic002G200100--Sobic007G026300 Sobic002G200100--Sobic007G104800
Octagon: transcription factors


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