Gene annotation
Transcriptome id Sobic.002G200100.1
Synonym Sb02g024580
Functional annotation AGAP000554-PA, putative, expressed
UniProt C5XC93
Pfam PF06221
Panther DB PTHR12963 PTHR12963:SF1
NCBI CDD KOG2845; Activating signal cointegrator 1
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G47610 : transcription regulators;zinc ion binding
RAP-DB (Rice) LOC_Os09g24660.1 : AGAP000554-PA, putative, expressed
MaizeGDB (Corn) Zm00025a046954
Brachypodium KQJ90222
Barley -
Wheat TraesCS5D02G239400 , TraesCS5B02G227000 , TraesCS5A02G228200
Populus -


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cDNA sequences
Sobic.002G200100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
2 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
3 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
4 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
5 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
6 Sobic.004G007300 expressed protein -
7 Sobic.004G205600 bromodomain domain containing protein, expressed -
8 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
9 Sobic.007G104800 expressed protein -
10 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
11 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
12 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
13 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
14 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
15 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
16 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
17 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
18 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
19 Sobic.003G029100 frigida, putative, expressed -
20 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic002G200100 Sobic002G200100 Sobic006G173100 Sobic006G173100 Sobic002G200100--Sobic006G173100 Sobic001G119300 Sobic001G119300 Sobic002G200100--Sobic001G119300 Sobic004G021100 Sobic004G021100 Sobic002G200100--Sobic004G021100 Sobic002G010300 Sobic002G010300 Sobic002G200100--Sobic002G010300 Sobic004G350100 Sobic004G350100 Sobic002G200100--Sobic004G350100 Sobic004G007300 Sobic004G007300 Sobic002G200100--Sobic004G007300 Sobic004G205600 Sobic004G205600 Sobic002G200100--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic002G200100--Sobic007G026300 Sobic007G104800 Sobic007G104800 Sobic002G200100--Sobic007G104800 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic001G119300--Sobic007G026300 Sobic002G350300 Sobic002G350300 Sobic001G119300--Sobic002G350300 Sobic006G088100 Sobic006G088100 Sobic001G119300--Sobic006G088100 Sobic009G205200 Sobic009G205200 Sobic001G119300--Sobic009G205200 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic002G010300--Sobic007G026300 Sobic002G010300--Sobic001G090400 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G010300--Sobic002G200100 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic004G007300--Sobic002G197100 Sobic001G408700 Sobic001G408700 Sobic004G007300--Sobic001G408700 Sobic004G345700 Sobic004G345700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic007G026300--Sobic001G497300 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic007G026300--Sobic004G057400 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500
Octagon: transcription factors


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