Gene annotation
Transcriptome id Sobic.009G056800.1
Synonym Sb09g004800
Functional annotation growth inhibition and differentiation-related protein 88, putative, expressed
UniProt C5Z0Q6
Pfam -
Panther DB PTHR21678
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22120 : -
RAP-DB (Rice) LOC_Os01g73470.1 : growth inhibition and differentiation-related protein 88, putative, expressed
MaizeGDB (Corn) Zm00025a042922
Brachypodium -
Barley HORVU3Hr1G112760.4 , HORVU3Hr1G112760.5 , HORVU3Hr1G112760.1 , HORVU3Hr1G112760.2
Wheat TraesCS3D02G521500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
2 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
3 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
4 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
5 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
6 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
7 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
8 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
9 Sobic.007G104800 expressed protein -
10 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
12 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
13 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
14 Sobic.004G205600 bromodomain domain containing protein, expressed -
15 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
16 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
17 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
18 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
19 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
20 Sobic.004G283000 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G056800 Sobic009G056800 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic006G173100 Sobic006G173100 Sobic009G056800--Sobic006G173100 Sobic004G350100 Sobic004G350100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic003G081000 Sobic003G081000 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic007G118200 Sobic007G118200 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G205600 Sobic004G205600 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic002G388200--Sobic004G283000 Sobic002G388200--Sobic009G056800 Sobic002G388200--Sobic006G173100 Sobic002G388200--Sobic003G187400 Sobic001G466700 Sobic001G466700 Sobic002G388200--Sobic001G466700 Sobic002G388200--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic002G388200--Sobic003G081000 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic001G512700--Sobic007G118600 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500
Octagon: transcription factors


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