Gene annotation
Transcriptome id Sobic.001G466700.1
Synonym ATPUB49, Sb01g043790, PUB49
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5WTU1
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF147
NCBI CDD -
KEGG Orthology K10598; PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT5G67530 : plant U-box 49
RAP-DB (Rice) LOC_Os03g10400.2 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a001165
Brachypodium KQK23071 , KQK23070
Barley HORVU4Hr1G070330.7 , HORVU4Hr1G070330.6 , HORVU4Hr1G070330.5 , HORVU4Hr1G070330.4 , HORVU4Hr1G070330.3 , HORVU4Hr1G070330.2 , HORVU4Hr1G070330.1 , HORVU4Hr1G070330.9 , HORVU4Hr1G070330.8 , HORVU4Hr1G070330.13 , HORVU4Hr1G070330.12 , HORVU4Hr1G070330.11 , HORVU4Hr1G070330.10
Wheat TraesCS4D02G259800 , TraesCS4B02G260100 , TraesCS4A02G045200
Populus PNT36806 , PNT36805


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G252700 protein kinase domain containing protein, expressed -
2 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
3 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
4 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
5 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
6 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
7 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
8 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
9 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
10 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
11 Sobic.002G034600 zinc ion binding protein, putative, expressed -
12 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
13 Sobic.004G205600 bromodomain domain containing protein, expressed -
14 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
15 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
16 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
17 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
18 Sobic.004G002400 expressed protein -
19 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
20 Sobic.009G228700 expressed protein -


Gene co-expression network
sample Sobic001G466700 Sobic001G466700 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic001G143500--Sobic003G439800 Sobic001G143500--Sobic001G466700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic004G283000 Sobic004G283000 Sobic002G388200--Sobic004G283000 Sobic002G388200--Sobic009G056800 Sobic006G173100 Sobic006G173100 Sobic002G388200--Sobic006G173100 Sobic003G187400 Sobic003G187400 Sobic002G388200--Sobic003G187400 Sobic002G388200--Sobic001G466700 Sobic002G388200--Sobic007G118200 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic002G388200--Sobic003G081000 Sobic001G371200--Sobic007G118200 Sobic001G371200--Sobic002G313500 Sobic001G371200--Sobic001G466700 Sobic001G371200--Sobic006G252700 Sobic001G371200--Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic001G371200--Sobic002G378200 Sobic007G200600 Sobic007G200600 Sobic001G371200--Sobic007G200600 Sobic001G371200--Sobic003G081000 Sobic001G371200--Sobic004G283000 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic001G512700 Sobic001G512700 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic009G056800--Sobic004G021100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic009G056800--Sobic007G104800 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.