Gene annotation
Transcriptome id Sobic.001G109800.1,Sobic.001G109800.2
Synonym CHB3, Sb01g009800, ATSWI3D
Functional annotation SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
UniProt C5WMX1 , C5WMW5
Pfam PF00569 PF00249 PF16495 PF04433
Panther DB PTHR12802 PTHR12802:SF39
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G34430 : DNA-binding family protein
RAP-DB (Rice) LOC_Os03g51220.1 : SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
MaizeGDB (Corn) Zm00025a016921 , Zm00025a007944
Brachypodium PNT74216 , PNT74217 , KQK13473 , KQK13472 , KQK13474
Barley HORVU4Hr1G008820.6 , HORVU4Hr1G008820.8 , HORVU4Hr1G008820.4 , HORVU4Hr1G008820.5 , HORVU4Hr1G008820.1 , HORVU4Hr1G008820.2 , HORVU4Hr1G008820.7
Wheat TraesCS4D02G053300 , TraesCS4D02G053300 , TraesCS4D02G053300 , TraesCS4B02G053000 , TraesCS4B02G053000 , TraesCS4A02G261600 , TraesCS4A02G261600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
2 Sobic.004G264400 TBC domain containing protein, expressed -
3 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
4 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
5 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
6 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
7 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
8 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
9 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
10 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.001G065000 expressed protein -
12 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
13 Sobic.010G069100 expressed protein -
14 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
15 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
16 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
17 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
18 Sobic.001G114000 expressed protein -
19 Sobic.010G116600 FHA domain containing protein, putative, expressed -
20 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic001G109800 Sobic001G109800 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic002G297200 Sobic002G297200 Sobic001G109800--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic004G146500--Sobic001G109800 Sobic010G069100 Sobic010G069100 Sobic004G146500--Sobic010G069100 Sobic004G146500--Sobic002G297200 Sobic004G146500--Sobic007G119200 Sobic004G274200 Sobic004G274200 Sobic004G146500--Sobic004G274200 Sobic004G146500--Sobic001G220300 Sobic001G155000 Sobic001G155000 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic008G047800 Sobic008G047800 Sobic004G146500--Sobic008G047800 Sobic004G264400--Sobic001G109800 Sobic009G113000 Sobic009G113000 Sobic004G264400--Sobic009G113000 Sobic002G132000 Sobic002G132000 Sobic004G264400--Sobic002G132000 Sobic007G024700 Sobic007G024700 Sobic004G264400--Sobic007G024700 Sobic004G331100 Sobic004G331100 Sobic004G264400--Sobic004G331100 Sobic006G115600 Sobic006G115600 Sobic004G264400--Sobic006G115600 Sobic001G065000 Sobic001G065000 Sobic004G264400--Sobic001G065000 Sobic004G264400--Sobic004G274200 Sobic007G075400 Sobic007G075400 Sobic004G264400--Sobic007G075400 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic001G512700 Sobic001G512700 Sobic002G297200--Sobic001G512700 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic007G119200--Sobic002G034600 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic007G217000 Sobic007G217000 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic001G474600 Sobic001G474600 Sobic009G166300--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic009G166300--Sobic007G011300 Sobic001G114000 Sobic001G114000 Sobic009G166300--Sobic001G114000 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic005G118600 Sobic005G118600 Sobic009G166300--Sobic005G118600 Sobic009G166300--Sobic001G109800 Sobic001G409600--Sobic003G397800 Sobic001G409600--Sobic010G101800 Sobic001G409600--Sobic002G297200 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic003G187400 Sobic003G187400 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic001G220300--Sobic004G146500 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic001G220300--Sobic010G101800 Sobic001G220300--Sobic001G109800 Sobic009G191000 Sobic009G191000 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic001G220300--Sobic004G274200 Sobic001G220300--Sobic002G297200 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic001G214300 Sobic001G214300 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic003G372700 Sobic003G372700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900
Octagon: transcription factors


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