Gene annotation
Transcriptome id Sobic.009G166300.1
Synonym UPL4, Sb09g022820
Functional annotation HECT-domain domain containing protein, expressed
UniProt A0A1B6P8W2
Pfam PF00632
Panther DB PTHR11254 PTHR11254:SF345
NCBI CDD -
KEGG Orthology K10590; E3 ubiquitin-protein ligase TRIP12
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G02880 : ubiquitin-protein ligase 4
RAP-DB (Rice) LOC_Os05g38830.2 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037745
Brachypodium KQK05853
Barley HORVU1Hr1G071580.2 , HORVU1Hr1G071580.3 , HORVU1Hr1G071580.1 , HORVU1Hr1G071580.6 , HORVU1Hr1G071580.7 , HORVU1Hr1G071580.4 , HORVU1Hr1G071580.5 , HORVU1Hr1G071580.8 , HORVU1Hr1G071580.9 , HORVU1Hr1G071580.10 , HORVU1Hr1G071580.11
Wheat TraesCS1B02G298000 , TraesCS1B02G298000 , TraesCS1B02G298000 , TraesCS1D02G287600 , TraesCS1A02G288600 , TraesCS1A02G288600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
2 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
3 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
4 Sobic.007G011300 SGR2, putative, expressed -
5 Sobic.001G114000 expressed protein -
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
8 Sobic.005G118600 NB-ARC domain containing protein, expressed -
9 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
10 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
11 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
12 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
13 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.001G290100 expressed protein -
15 Sobic.001G241200 protein kinase domain containing protein, expressed -
16 Sobic.010G069100 expressed protein -
17 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
18 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
19 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
20 Sobic.009G249200 transmembrane protein, putative, expressed -


Gene co-expression network
sample Sobic009G166300 Sobic009G166300 Sobic007G217000 Sobic007G217000 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic001G474600 Sobic001G474600 Sobic009G166300--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic009G166300--Sobic007G011300 Sobic001G114000 Sobic001G114000 Sobic009G166300--Sobic001G114000 Sobic008G047800 Sobic008G047800 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic005G118600 Sobic005G118600 Sobic009G166300--Sobic005G118600 Sobic001G109800 Sobic001G109800 Sobic009G166300--Sobic001G109800 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic003G408500--Sobic009G166300 Sobic003G408500--Sobic005G045300 Sobic001G512700 Sobic001G512700 Sobic003G408500--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic003G408500--Sobic004G205600 Sobic003G408500--Sobic007G217000 Sobic003G397800 Sobic003G397800 Sobic003G408500--Sobic003G397800 Sobic004G021100 Sobic004G021100 Sobic003G408500--Sobic004G021100 Sobic003G408500--Sobic001G109800 Sobic003G408500--Sobic004G067700 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic007G011300--Sobic008G047800 Sobic007G011300--Sobic009G166300 Sobic007G011300--Sobic001G155000 Sobic002G006900 Sobic002G006900 Sobic007G011300--Sobic002G006900 Sobic005G112300 Sobic005G112300 Sobic007G011300--Sobic005G112300 Sobic007G011300--Sobic007G217000 Sobic009G040600 Sobic009G040600 Sobic007G011300--Sobic009G040600 Sobic002G112700 Sobic002G112700 Sobic007G011300--Sobic002G112700 Sobic007G011300--Sobic001G114000 Sobic001G114000--Sobic007G217000 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic001G114000--Sobic004G067700 Sobic001G114000--Sobic009G166300 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic005G045300--Sobic001G512700 Sobic005G045300--Sobic003G408500 Sobic010G129200 Sobic010G129200 Sobic005G045300--Sobic010G129200 Sobic003G445400 Sobic003G445400 Sobic005G045300--Sobic003G445400 Sobic005G045300--Sobic009G166300 Sobic004G031700 Sobic004G031700 Sobic005G045300--Sobic004G031700 Sobic006G128900 Sobic006G128900 Sobic005G045300--Sobic006G128900 Sobic005G045300--Sobic002G006900 Sobic008G024600 Sobic008G024600 Sobic005G045300--Sobic008G024600 Sobic003G059750 Sobic003G059750 Sobic005G118600--Sobic003G059750 Sobic008G084700 Sobic008G084700 Sobic005G118600--Sobic008G084700 Sobic003G225700 Sobic003G225700 Sobic005G118600--Sobic003G225700 Sobic005G118600--Sobic001G065000 Sobic005G118600--Sobic009G166300 Sobic008G153000 Sobic008G153000 Sobic005G118600--Sobic008G153000 Sobic005G118600--Sobic001G114000 Sobic002G071500 Sobic002G071500 Sobic005G118600--Sobic002G071500 Sobic007G103600 Sobic007G103600 Sobic005G118600--Sobic007G103600 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic002G297200 Sobic002G297200 Sobic001G109800--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic001G109800--Sobic007G119200 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500
Octagon: transcription factors


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