Gene annotation
Transcriptome id Sobic.007G011300.1
Synonym Sb07g001100, SGR2
Functional annotation SGR2, putative, expressed
UniProt C5YLW9
Pfam PF02862
Panther DB PTHR23509:SF10 PTHR23509
NCBI CDD KOG2308; Phosphatidic acid-preferring phospholipase A1, contains DDHD domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31480 : shoot gravitropism 2 (SGR2)
RAP-DB (Rice) LOC_Os08g01920.1 : SGR2, putative, expressed
MaizeGDB (Corn) Zm00025a030290 , Zm00025a040192
Brachypodium KQJ94825
Barley HORVU7Hr1G076810.13 , HORVU7Hr1G076810.12 , HORVU7Hr1G076810.11 , HORVU7Hr1G076810.10 , HORVU7Hr1G076810.17 , HORVU7Hr1G076810.16 , HORVU7Hr1G076810.15 , HORVU7Hr1G076810.14 , HORVU7Hr1G076810.9 , HORVU7Hr1G076810.8 , HORVU7Hr1G076810.3 , HORVU7Hr1G076810.2 , HORVU7Hr1G076810.7 , HORVU7Hr1G076810.6 , HORVU7Hr1G076810.5 , HORVU7Hr1G076810.4
Wheat TraesCS7B02G221600 , TraesCS7A02G320600 , TraesCS7D02G317500 , TraesCS7D02G317500
Populus PNT07645


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cDNA sequences
Sobic.007G011300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
3 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
4 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
5 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
6 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
7 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
9 Sobic.001G114000 expressed protein -
10 Sobic.003G372700 expressed protein -
11 Sobic.007G008900 SAC domain containing protein, putative, expressed -
12 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
13 Sobic.001G363500 DIRP family protein, putative, expressed -
14 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
15 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
16 Sobic.002G405800 PHD-finger family protein, expressed -
17 Sobic.009G191000 MATH domain containing protein, expressed -
18 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
19 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
20 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4


Gene co-expression network
sample Sobic007G011300 Sobic007G011300 Sobic008G047800 Sobic008G047800 Sobic007G011300--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G011300--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G011300--Sobic001G155000 Sobic002G006900 Sobic002G006900 Sobic007G011300--Sobic002G006900 Sobic005G112300 Sobic005G112300 Sobic007G011300--Sobic005G112300 Sobic007G217000 Sobic007G217000 Sobic007G011300--Sobic007G217000 Sobic009G040600 Sobic009G040600 Sobic007G011300--Sobic009G040600 Sobic002G112700 Sobic002G112700 Sobic007G011300--Sobic002G112700 Sobic001G114000 Sobic001G114000 Sobic007G011300--Sobic001G114000 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic001G474600 Sobic001G474600 Sobic009G166300--Sobic001G474600 Sobic009G166300--Sobic007G011300 Sobic009G166300--Sobic001G114000 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic005G118600 Sobic005G118600 Sobic009G166300--Sobic005G118600 Sobic001G109800 Sobic001G109800 Sobic009G166300--Sobic001G109800 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic002G112700--Sobic001G114000 Sobic007G218000 Sobic007G218000 Sobic002G112700--Sobic007G218000 Sobic007G008900 Sobic007G008900 Sobic002G112700--Sobic007G008900 Sobic003G059750 Sobic003G059750 Sobic002G112700--Sobic003G059750 Sobic002G405800 Sobic002G405800 Sobic002G112700--Sobic002G405800 Sobic003G444800 Sobic003G444800 Sobic002G112700--Sobic003G444800 Sobic004G072100 Sobic004G072100 Sobic002G112700--Sobic004G072100 Sobic002G112700--Sobic007G011300 Sobic002G112700--Sobic009G166300 Sobic001G114000--Sobic007G217000 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic001G114000--Sobic004G067700 Sobic001G114000--Sobic009G166300 Sobic001G114000--Sobic008G047800 Sobic001G114000--Sobic004G072100 Sobic001G114000--Sobic005G118600 Sobic001G114000--Sobic009G126400
Octagon: transcription factors


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