Gene annotation
Transcriptome id Sobic.009G040600.1
Synonym ATCHR12, Sb09g003430
Functional annotation expressed protein
UniProt C5YZZ8
Pfam PF14619 PF04851 PF00271
Panther DB PTHR10799 PTHR10799:SF640
NCBI CDD -
KEGG Orthology K11647; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G06010 : Homeotic gene regulator
RAP-DB (Rice) LOC_Os05g05230.1 : expressed protein
MaizeGDB (Corn) Zm00025a015148 , Zm00025a055382 , Zm00025a015151 , Zm00025a015138
Brachypodium KQK07536 , KQK07582
Barley HORVU1Hr1G019290.4 , HORVU1Hr1G019290.5 , HORVU1Hr1G019290.1 , HORVU1Hr1G019290.3
Wheat TraesCS1B02G106900 , TraesCS1B02G106900 , TraesCS1B02G106900 , TraesCS1B02G106900 , TraesCS1A02G087900 , TraesCS1D02G089200 , TraesCS1D02G089200 , TraesCS1D02G089200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
2 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
4 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
5 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
6 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
7 Sobic.008G028700 SET domain containing protein, expressed -
8 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
9 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
10 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
11 Sobic.004G314000 expressed protein -
12 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
13 Sobic.003G372700 expressed protein -
14 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.007G117400 expressed protein -
17 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
18 Sobic.008G113100 protein binding protein, putative, expressed -
19 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
20 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3


Gene co-expression network
sample Sobic009G040600 Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic002G006900 Sobic002G006900 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic003G280800 Sobic003G280800 Sobic004G208900--Sobic003G280800 Sobic004G208900--Sobic009G126400 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic009G126400--Sobic003G052200 Sobic009G126400--Sobic009G040600 Sobic009G126400--Sobic008G047800 Sobic009G126400--Sobic003G280800 Sobic001G222500 Sobic001G222500 Sobic009G126400--Sobic001G222500 Sobic008G162900 Sobic008G162900 Sobic009G126400--Sobic008G162900 Sobic007G096000 Sobic007G096000 Sobic009G126400--Sobic007G096000 Sobic009G126400--Sobic004G208900 Sobic009G126400--Sobic002G309600
Octagon: transcription factors


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