Gene annotation
Transcriptome id Sobic.001G222500.1
Synonym
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6QKB4
Pfam PF00270 PF00271 PF07717 PF04408
Panther DB PTHR18934 PTHR18934:SF100
NCBI CDD -
KEGG Orthology K14442; DHX36, ATP-dependent RNA helicase DHX36
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT2G35920 : RNA helicase family protein
RAP-DB (Rice) LOC_Os10g33275.1 : DEAD/DEAH box helicase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025107 , Zm00025a025106 , Zm00025a031769 , Zm00025a048878 , Zm00025a048877 , Zm00025a006653 , Zm00025a012743 , Zm00025a031770
Brachypodium KQJ97041
Barley HORVU1Hr1G039880.8 , HORVU1Hr1G039880.7 , HORVU1Hr1G039880.6 , HORVU1Hr1G039880.5 , HORVU1Hr1G039880.4 , HORVU1Hr1G039880.3 , HORVU1Hr1G039880.2 , HORVU1Hr1G039880.1 , HORVU1Hr1G039880.9 , HORVU1Hr1G039880.11 , HORVU1Hr1G039880.10
Wheat TraesCS1B02G168700 , TraesCS1B02G168700 , TraesCS1B02G168700 , TraesCS1B02G168700 , TraesCS1B02G168700 , TraesCS1B02G168700 , TraesCS1A02G151100 , TraesCS1D02G148100 , TraesCS1D02G148100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
2 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
3 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
4 Sobic.002G310200 expressed protein -
5 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
6 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.003G052200 G-patch domain containing protein, expressed -
9 Sobic.007G096000 expressed protein -
10 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
11 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
12 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
13 Sobic.005G013200 BAH domain containing protein, expressed -
14 Sobic.009G126600 cyclin-dependent kinase D-1, putative, expressed K02202: cyclin-dependent kinase 7
15 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
16 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
17 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
19 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
20 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -


Gene co-expression network
sample Sobic001G222500 Sobic001G222500 Sobic004G084300 Sobic004G084300 Sobic001G222500--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G222500--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic009G040600 Sobic009G040600 Sobic001G222500--Sobic009G040600 Sobic002G006900 Sobic002G006900 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic004G084300--Sobic008G047800 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G155000--Sobic001G222500 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic009G126400--Sobic003G052200 Sobic009G126400--Sobic009G040600 Sobic009G126400--Sobic008G047800 Sobic003G280800 Sobic003G280800 Sobic009G126400--Sobic003G280800 Sobic009G126400--Sobic001G222500 Sobic008G162900 Sobic008G162900 Sobic009G126400--Sobic008G162900 Sobic009G126400--Sobic007G096000 Sobic004G208900 Sobic004G208900 Sobic009G126400--Sobic004G208900 Sobic009G126400--Sobic002G309600 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic003G052200--Sobic009G126400 Sobic003G052200--Sobic004G208900 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic007G096000--Sobic003G280800 Sobic003G445400 Sobic003G445400 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic001G474600 Sobic001G474600 Sobic007G096000--Sobic001G474600 Sobic007G096000--Sobic001G222500 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.