Gene annotation
Transcriptome id Sobic.009G126600.1
Synonym 1, Sb09g019400, AT, CDKD, CDKD1, CAK3AT
Functional annotation cyclin-dependent kinase D-1, putative, expressed
UniProt C5YXJ4
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF0
NCBI CDD -
KEGG Orthology K02202; cyclin-dependent kinase 7
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G73690 : cyclin-dependent kinase D1;1
RAP-DB (Rice) LOC_Os05g32600.1 : cyclin-dependent kinase D-1, putative, expressed
MaizeGDB (Corn) Zm00025a037629 , Zm00025a043582
Brachypodium KQK06467
Barley HORVU1Hr1G062980.2
Wheat TraesCS1A02G245600 , TraesCS1D02G245300 , TraesCS1B02G256600
Populus -


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cDNA sequences
Sobic.009G126600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
3 Sobic.006G165000 RNA recognition motif containing protein, expressed -
4 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
5 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
6 Sobic.001G407200 SacI homology domain containing protein, expressed -
7 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
8 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
9 Sobic.005G013200 BAH domain containing protein, expressed -
10 Sobic.006G202200 ENTH domain containing protein, expressed K12471: epsin
11 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
12 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
13 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
14 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
15 Sobic.007G125000 OsAPRL4 adenosine 5\'-phosphosulfate reductase-like OsAPRL4, expressed -
16 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
17 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
18 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
19 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
20 Sobic.002G164300 ZOS9-03 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic009G126600 Sobic009G126600 Sobic001G222500 Sobic001G222500 Sobic009G126600--Sobic001G222500 Sobic010G185400 Sobic010G185400 Sobic009G126600--Sobic010G185400 Sobic006G165000 Sobic006G165000 Sobic009G126600--Sobic006G165000 Sobic001G155000 Sobic001G155000 Sobic009G126600--Sobic001G155000 Sobic002G357700 Sobic002G357700 Sobic009G126600--Sobic002G357700 Sobic001G407200 Sobic001G407200 Sobic009G126600--Sobic001G407200 Sobic008G149800 Sobic008G149800 Sobic009G126600--Sobic008G149800 Sobic003G241200 Sobic003G241200 Sobic009G126600--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic009G126600--Sobic005G013200 Sobic004G084300 Sobic004G084300 Sobic001G222500--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic009G040600 Sobic009G040600 Sobic001G222500--Sobic009G040600 Sobic002G006900 Sobic002G006900 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic007G096000 Sobic007G096000 Sobic001G222500--Sobic007G096000 Sobic003G189600 Sobic003G189600 Sobic010G185400--Sobic003G189600 Sobic006G077200 Sobic006G077200 Sobic010G185400--Sobic006G077200 Sobic009G084900 Sobic009G084900 Sobic010G185400--Sobic009G084900 Sobic008G082500 Sobic008G082500 Sobic010G185400--Sobic008G082500 Sobic001G035200 Sobic001G035200 Sobic010G185400--Sobic001G035200 Sobic010G185400--Sobic009G126600 Sobic007G042400 Sobic007G042400 Sobic010G185400--Sobic007G042400 Sobic003G416700 Sobic003G416700 Sobic010G185400--Sobic003G416700 Sobic004G072100 Sobic004G072100 Sobic010G185400--Sobic004G072100 Sobic006G165000--Sobic003G241200 Sobic006G165000--Sobic001G155000 Sobic003G084900 Sobic003G084900 Sobic006G165000--Sobic003G084900 Sobic003G200200 Sobic003G200200 Sobic006G165000--Sobic003G200200 Sobic010G028800 Sobic010G028800 Sobic006G165000--Sobic010G028800 Sobic004G145500 Sobic004G145500 Sobic006G165000--Sobic004G145500 Sobic006G165000--Sobic009G126600 Sobic006G165000--Sobic001G222500 Sobic006G032400 Sobic006G032400 Sobic006G165000--Sobic006G032400 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic002G357700--Sobic008G149800 Sobic006G116100 Sobic006G116100 Sobic002G357700--Sobic006G116100 Sobic005G154500 Sobic005G154500 Sobic002G357700--Sobic005G154500 Sobic002G164300 Sobic002G164300 Sobic002G357700--Sobic002G164300 Sobic002G357700--Sobic005G013200 Sobic002G063900 Sobic002G063900 Sobic002G357700--Sobic002G063900 Sobic006G186400 Sobic006G186400 Sobic002G357700--Sobic006G186400 Sobic002G357700--Sobic008G153000 Sobic002G357700--Sobic009G126600 Sobic009G210500 Sobic009G210500 Sobic001G407200--Sobic009G210500 Sobic008G162900 Sobic008G162900 Sobic001G407200--Sobic008G162900 Sobic001G407200--Sobic005G013200 Sobic002G144933 Sobic002G144933 Sobic001G407200--Sobic002G144933 Sobic010G129200 Sobic010G129200 Sobic001G407200--Sobic010G129200 Sobic010G277500 Sobic010G277500 Sobic001G407200--Sobic010G277500 Sobic001G407200--Sobic009G126400 Sobic001G407200--Sobic004G084300 Sobic001G407200--Sobic008G047800 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic008G149800--Sobic005G154500 Sobic008G149800--Sobic001G155000 Sobic003G241200--Sobic004G084300 Sobic003G241200--Sobic006G165000 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic002G103600 Sobic002G103600 Sobic005G013200--Sobic002G103600 Sobic005G013200--Sobic010G129200 Sobic005G013200--Sobic008G162900 Sobic005G013200--Sobic001G407200 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic005G013200--Sobic004G084300
Octagon: transcription factors


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