Gene annotation
Transcriptome id Sobic.008G100100.1
Synonym CDC5, ATMYBCDC5, Sb08g015280, ATCDC5
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5YNT7
Pfam PF13921 PF11831
Panther DB PTHR10641 PTHR10641:SF559
NCBI CDD -
KEGG Orthology K12860; CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09770 : cell division cycle 5
RAP-DB (Rice) LOC_Os04g28090.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a026212
Brachypodium KQJ86680
Barley HORVU5Hr1G080010.8 , HORVU5Hr1G080010.3 , HORVU5Hr1G108630.3 , HORVU5Hr1G108630.2 , HORVU5Hr1G108630.1 , HORVU5Hr1G108630.4 , HORVU5Hr1G080010.4 , HORVU5Hr1G080010.5 , HORVU5Hr1G080010.6 , HORVU5Hr1G080010.7 , HORVU5Hr1G080010.2
Wheat TraesCS5D02G460800 , TraesCS5B02G307500 , TraesCS5B02G307500 , TraesCS5A02G450800 , TraesCS5A02G307100 , TraesCS5D02G314000 , TraesCS5B02G459200 , TraesCS5A02G307100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G156500 expressed protein -
2 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
3 Sobic.006G032400 expressed protein -
4 Sobic.005G015900 dnaJ domain containing protein, expressed -
5 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
6 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
9 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
10 Sobic.006G052300 dnaJ domain containing protein, expressed -
11 Sobic.002G320500 MYB family transcription factor, putative, expressed -
12 Sobic.003G293200 plus-3 domain containing protein, expressed -
13 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G063900 zinc ion binding protein, putative, expressed -
15 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
16 Sobic.001G253200 mandelonitrile lyase, putative, expressed -
17 Sobic.007G054400 FAR1 family protein, expressed -
18 Sobic.002G151600 R-interacting factor 1, putative, expressed -
19 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
20 Sobic.007G090430 - -


Gene co-expression network
sample Sobic008G100100 Sobic008G100100 Sobic004G156500 Sobic004G156500 Sobic008G100100--Sobic004G156500 Sobic001G306900 Sobic001G306900 Sobic008G100100--Sobic001G306900 Sobic006G032400 Sobic006G032400 Sobic008G100100--Sobic006G032400 Sobic005G015900 Sobic005G015900 Sobic008G100100--Sobic005G015900 Sobic006G210000 Sobic006G210000 Sobic008G100100--Sobic006G210000 Sobic007G031600 Sobic007G031600 Sobic008G100100--Sobic007G031600 Sobic010G065300 Sobic010G065300 Sobic008G100100--Sobic010G065300 Sobic003G241200 Sobic003G241200 Sobic008G100100--Sobic003G241200 Sobic010G096000 Sobic010G096000 Sobic008G100100--Sobic010G096000 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic001G134300 Sobic001G134300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic002G320500 Sobic002G320500 Sobic006G032400--Sobic002G320500 Sobic002G248400 Sobic002G248400 Sobic006G032400--Sobic002G248400 Sobic006G032400--Sobic005G015900 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic001G090400 Sobic001G090400 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic004G271000 Sobic004G271000 Sobic006G032400--Sobic004G271000 Sobic006G032400--Sobic001G094000 Sobic005G015900--Sobic006G032400 Sobic004G031700 Sobic004G031700 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic001G176200 Sobic001G176200 Sobic005G015900--Sobic001G176200 Sobic005G015900--Sobic002G320500 Sobic005G015900--Sobic001G090400 Sobic002G158700 Sobic002G158700 Sobic005G015900--Sobic002G158700 Sobic005G015900--Sobic001G303675 Sobic003G445400 Sobic003G445400 Sobic005G015900--Sobic003G445400 Sobic010G001100 Sobic010G001100 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic006G210000--Sobic004G156500 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic006G210000--Sobic007G031600 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic007G031600--Sobic003G293200 Sobic009G166100 Sobic009G166100 Sobic007G031600--Sobic009G166100 Sobic007G031600--Sobic006G210000 Sobic007G031600--Sobic008G100100 Sobic007G031600--Sobic004G156500 Sobic001G170100 Sobic001G170100 Sobic007G031600--Sobic001G170100 Sobic008G131000 Sobic008G131000 Sobic007G031600--Sobic008G131000 Sobic001G352900 Sobic001G352900 Sobic007G031600--Sobic001G352900 Sobic004G009600 Sobic004G009600 Sobic007G031600--Sobic004G009600 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic010G065300--Sobic001G134300 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic003G241200--Sobic006G032400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic001G246500 Sobic001G246500 Sobic010G096000--Sobic001G246500 Sobic010G096000--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic010G096000--Sobic004G086200 Sobic010G096000--Sobic001G306900 Sobic001G346900 Sobic001G346900 Sobic010G096000--Sobic001G346900 Sobic008G173100 Sobic008G173100 Sobic010G096000--Sobic008G173100 Sobic010G096000--Sobic003G416700 Sobic001G155400 Sobic001G155400 Sobic010G096000--Sobic001G155400 Sobic008G147200 Sobic008G147200 Sobic010G096000--Sobic008G147200
Octagon: transcription factors


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