Gene annotation
Transcriptome id Sobic.006G210000.1
Synonym Sb06g028070, EMB1135
Functional annotation zinc finger domain, LSD1 subclass family protein, expressed
UniProt A0A1B6PN30
Pfam PF03004
Panther DB PTHR33144 PTHR33144:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79350 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os04g52050.1 : TNP1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2B02G448400 , TraesCS2B02G448400 , TraesCS2B02G448400 , TraesCS2D02G426000 , TraesCS2D02G426000 , TraesCS2D02G426000 , TraesCS2A02G428000 , TraesCS2A02G428000 , TraesCS2A02G428000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001100 chromo domain containing protein, expressed -
2 Sobic.003G293200 plus-3 domain containing protein, expressed -
3 Sobic.004G156500 expressed protein -
4 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
5 Sobic.004G355800 expressed protein -
6 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
8 Sobic.006G052300 dnaJ domain containing protein, expressed -
9 Sobic.005G191900 transporter family protein, putative, expressed -
10 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
11 Sobic.006G118700 MYB family transcription factor, putative, expressed -
12 Sobic.004G155600 dnaJ domain containing protein, expressed -
13 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
14 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
15 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
16 Sobic.006G039800 ATP-binding region, ATPase-like domain containing protein, expressed -
17 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
18 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G398800 FHA domain containing protein, putative, expressed -
20 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius


Gene co-expression network
sample Sobic006G210000 Sobic006G210000 Sobic010G001100 Sobic010G001100 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic010G001100--Sobic010G065300 Sobic004G048800 Sobic004G048800 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic010G001100--Sobic003G293200 Sobic004G242400 Sobic004G242400 Sobic010G001100--Sobic004G242400 Sobic009G109200 Sobic009G109200 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic009G256300 Sobic009G256300 Sobic010G001100--Sobic009G256300 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic001G134300 Sobic001G134300 Sobic004G156500--Sobic001G134300 Sobic001G306900 Sobic001G306900 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic002G153700 Sobic002G153700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic010G065300--Sobic001G134300 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic010G065300--Sobic004G156500 Sobic010G065300--Sobic004G048800 Sobic005G200900 Sobic005G200900 Sobic004G355800--Sobic005G200900 Sobic004G355800--Sobic006G118700 Sobic004G355800--Sobic006G210000 Sobic004G355800--Sobic002G154000 Sobic004G155600 Sobic004G155600 Sobic004G355800--Sobic004G155600 Sobic004G355800--Sobic005G191900 Sobic006G067600 Sobic006G067600 Sobic004G355800--Sobic006G067600 Sobic004G355800--Sobic004G156500 Sobic008G002500 Sobic008G002500 Sobic004G355800--Sobic008G002500 Sobic007G031600--Sobic003G293200 Sobic007G031600--Sobic009G166100 Sobic007G031600--Sobic006G210000 Sobic007G031600--Sobic008G100100 Sobic007G031600--Sobic004G156500 Sobic001G170100 Sobic001G170100 Sobic007G031600--Sobic001G170100 Sobic008G131000 Sobic008G131000 Sobic007G031600--Sobic008G131000 Sobic007G031600--Sobic001G352900 Sobic007G031600--Sobic004G009600 Sobic008G100100--Sobic004G156500 Sobic008G100100--Sobic001G306900 Sobic006G032400 Sobic006G032400 Sobic008G100100--Sobic006G032400 Sobic005G015900 Sobic005G015900 Sobic008G100100--Sobic005G015900 Sobic008G100100--Sobic006G210000 Sobic008G100100--Sobic007G031600 Sobic008G100100--Sobic010G065300 Sobic003G241200 Sobic003G241200 Sobic008G100100--Sobic003G241200 Sobic010G096000 Sobic010G096000 Sobic008G100100--Sobic010G096000 Sobic006G052300--Sobic004G264300 Sobic006G052300--Sobic004G009600 Sobic006G220000 Sobic006G220000 Sobic006G052300--Sobic006G220000 Sobic007G054400 Sobic007G054400 Sobic006G052300--Sobic007G054400 Sobic004G096500 Sobic004G096500 Sobic006G052300--Sobic004G096500 Sobic006G052300--Sobic006G210000 Sobic004G145500 Sobic004G145500 Sobic006G052300--Sobic004G145500 Sobic006G052300--Sobic008G100100 Sobic010G277500 Sobic010G277500 Sobic006G052300--Sobic010G277500 Sobic001G311500 Sobic001G311500 Sobic005G191900--Sobic001G311500 Sobic001G363500 Sobic001G363500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic010G112100 Sobic010G112100 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic005G191900--Sobic006G118700 Sobic008G028700 Sobic008G028700 Sobic005G191900--Sobic008G028700 Sobic005G191900--Sobic008G002500
Octagon: transcription factors


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