Gene annotation
Transcriptome id Sobic.007G071200.1,Sobic.007G071200.2,Sobic.007G071200.3
Synonym Sb07g005630
Functional annotation KH domain-containing protein, putative, expressed
UniProt C5YIF0
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF137
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G46190 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os08g10030.2 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029944 , Zm00025a054835
Brachypodium KQJ95524 , KQJ95523 , KQJ95522
Barley HORVU5Hr1G121900.1 , HORVU5Hr1G121900.2 , HORVU5Hr1G121900.3 , HORVU5Hr1G121900.4 , HORVU5Hr1G121900.5
Wheat TraesCS3D02G519700 , TraesCS4A02G333900 , TraesCS5D02G538200 , TraesCS5D02G538200 , TraesCS5D02G538200 , TraesCS5D02G538200 , TraesCS3A02G512500 , TraesCS3B02G580700 , TraesCS5B02G551800 , TraesCS4A02G333900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
2 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
3 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
4 Sobic.006G118700 MYB family transcription factor, putative, expressed -
5 Sobic.005G191900 transporter family protein, putative, expressed -
6 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
7 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
8 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
9 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
10 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
11 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
12 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
13 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
14 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
15 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
16 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
17 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
18 Sobic.002G309200 FAR1 family protein, expressed -
19 Sobic.002G063900 zinc ion binding protein, putative, expressed -
20 Sobic.007G000800 expressed protein -


Gene co-expression network
sample Sobic007G071200 Sobic007G071200 Sobic008G173100 Sobic008G173100 Sobic007G071200--Sobic008G173100 Sobic009G050900 Sobic009G050900 Sobic007G071200--Sobic009G050900 Sobic001G493200 Sobic001G493200 Sobic007G071200--Sobic001G493200 Sobic006G118700 Sobic006G118700 Sobic007G071200--Sobic006G118700 Sobic005G191900 Sobic005G191900 Sobic007G071200--Sobic005G191900 Sobic009G177500 Sobic009G177500 Sobic007G071200--Sobic009G177500 Sobic002G083500 Sobic002G083500 Sobic007G071200--Sobic002G083500 Sobic003G133900 Sobic003G133900 Sobic007G071200--Sobic003G133900 Sobic003G401100 Sobic003G401100 Sobic007G071200--Sobic003G401100 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic003G141500 Sobic003G141500 Sobic009G050900--Sobic003G141500 Sobic007G203200 Sobic007G203200 Sobic009G050900--Sobic007G203200 Sobic001G281600 Sobic001G281600 Sobic009G050900--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic009G050900--Sobic008G083000 Sobic001G219600 Sobic001G219600 Sobic009G050900--Sobic001G219600 Sobic009G050900--Sobic007G071200 Sobic008G011100 Sobic008G011100 Sobic009G050900--Sobic008G011100 Sobic009G050900--Sobic001G493200 Sobic010G140400 Sobic010G140400 Sobic009G050900--Sobic010G140400 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic005G191900--Sobic001G311500 Sobic001G363500 Sobic001G363500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic005G191900--Sobic006G118700 Sobic008G028700 Sobic008G028700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic009G177500--Sobic010G112100 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic001G384300 Sobic001G384300 Sobic002G083500--Sobic001G384300 Sobic002G154000 Sobic002G154000 Sobic002G083500--Sobic002G154000 Sobic002G083500--Sobic001G433800 Sobic002G083500--Sobic001G493200 Sobic002G083500--Sobic002G260400 Sobic002G083500--Sobic003G133900 Sobic006G234700 Sobic006G234700 Sobic002G083500--Sobic006G234700 Sobic002G083500--Sobic007G090430 Sobic001G398800 Sobic001G398800 Sobic002G083500--Sobic001G398800 Sobic004G309900 Sobic004G309900 Sobic003G133900--Sobic004G309900 Sobic003G133900--Sobic001G493200 Sobic003G133900--Sobic002G083500 Sobic003G133900--Sobic001G398800 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic006G210000 Sobic006G210000 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic003G133900--Sobic007G071200 Sobic003G401100--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic004G274200 Sobic004G274200 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200
Octagon: transcription factors


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