Gene annotation
Transcriptome id Sobic.008G014500.3,Sobic.008G014500.2,Sobic.008G014500.4
Synonym Sb08g001290
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5YQK8
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF350
NCBI CDD KOG0117; Heterogeneous nuclear ribonucleoprotein R (RRM superfamily)
KEGG Orthology K13161; heterogeneous nuclear ribonucleoprotein R
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G00830 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os12g04180.3,LOC_Os12g04180.4,LOC_Os12g04180.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a013102 , Zm00025a033427 , Zm00025a053691
Brachypodium -
Barley -
Wheat TraesCS4A02G186200 , TraesCS4B02G132700 , TraesCS4B02G132700 , TraesCS4B02G132700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
2 Sobic.001G091400 expressed protein -
3 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
4 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
5 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
6 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
8 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
9 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
10 Sobic.010G116600 FHA domain containing protein, putative, expressed -
11 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
12 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
13 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
14 Sobic.007G183900 ubiquitin family protein, putative, expressed -
15 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
16 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
17 Sobic.010G245000 DTW domain containing protein, putative, expressed -
18 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
20 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2


Gene co-expression network
sample Sobic008G014500 Sobic008G014500 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic010G166400--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic010G166400--Sobic010G116600 Sobic010G059500 Sobic010G059500 Sobic010G166400--Sobic010G059500 Sobic007G207200 Sobic007G207200 Sobic010G166400--Sobic007G207200 Sobic003G093800 Sobic003G093800 Sobic010G166400--Sobic003G093800 Sobic007G042400 Sobic007G042400 Sobic010G166400--Sobic007G042400 Sobic002G317200 Sobic002G317200 Sobic010G166400--Sobic002G317200 Sobic009G177500 Sobic009G177500 Sobic010G166400--Sobic009G177500 Sobic009G084900 Sobic009G084900 Sobic010G166400--Sobic009G084900 Sobic002G071500 Sobic002G071500 Sobic001G091400--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic001G091400--Sobic001G026200 Sobic001G091400--Sobic010G116600 Sobic001G091400--Sobic008G014500 Sobic001G091400--Sobic010G236400 Sobic003G289400 Sobic003G289400 Sobic001G091400--Sobic003G289400 Sobic001G398800 Sobic001G398800 Sobic001G091400--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic001G091400--Sobic007G183900 Sobic001G452000 Sobic001G452000 Sobic001G091400--Sobic001G452000 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G236400--Sobic010G116600 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic002G275600--Sobic003G006400 Sobic002G275600--Sobic010G209400 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic001G392300 Sobic001G392300 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic010G209400--Sobic010G236400 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800 Sobic002G153700 Sobic002G153700 Sobic009G119000--Sobic002G153700 Sobic003G059750 Sobic003G059750 Sobic009G119000--Sobic003G059750 Sobic009G119000--Sobic002G071500 Sobic010G065300 Sobic010G065300 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic003G416700 Sobic003G416700 Sobic009G119000--Sobic003G416700 Sobic004G048800 Sobic004G048800 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic001G522600--Sobic008G014500 Sobic001G522600--Sobic006G200700 Sobic001G522600--Sobic009G044800 Sobic001G522600--Sobic007G183900
Octagon: transcription factors


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