Gene annotation
Transcriptome id Sobic.001G522600.6,Sobic.001G522600.4,Sobic.001G522600.5,Sobic.001G522600.2,Sobic.001G522600.3
Synonym Sb01g048720
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A1B6QQT1 , A0A1B6QQT2
Pfam PF01448
Panther DB PTHR10615 PTHR10615:SF117
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G19260 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os04g34720.1,LOC_Os04g34720.2 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000361
Brachypodium -
Barley HORVU4Hr1G030120.19 , HORVU4Hr1G030120.15 , HORVU4Hr1G030120.16 , HORVU4Hr1G030120.21 , HORVU4Hr1G030120.23 , HORVU4Hr1G030120.22 , HORVU4Hr1G030120.25 , HORVU4Hr1G030120.24 , HORVU4Hr1G030120.27 , HORVU4Hr1G030120.26 , HORVU4Hr1G030120.29 , HORVU4Hr1G030120.28 , HORVU4Hr1G030120.32 , HORVU4Hr1G030120.30 , HORVU4Hr1G030120.31 , HORVU4Hr1G030120.6 , HORVU4Hr1G030120.7
Wheat TraesCS4A02G166600 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4B02G145500 , TraesCS4D02G153100 , TraesCS4D02G153100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.008G002500 RCD1, putative, expressed -
4 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
5 Sobic.009G095100 expressed protein -
6 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
7 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
8 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
9 Sobic.007G183900 ubiquitin family protein, putative, expressed -
10 Sobic.001G091400 expressed protein -
11 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
12 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.006G040800 expressed protein -
14 Sobic.003G102400 expressed protein -
15 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
17 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
18 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
19 Sobic.004G185800 expressed protein -
20 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14


Gene co-expression network
sample Sobic001G522600 Sobic001G522600 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G392300 Sobic001G392300 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic010G236400 Sobic010G236400 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic008G014500 Sobic008G014500 Sobic001G522600--Sobic008G014500 Sobic006G200700 Sobic006G200700 Sobic001G522600--Sobic006G200700 Sobic009G044800 Sobic009G044800 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic007G061000--Sobic001G392300 Sobic007G061000--Sobic001G522600 Sobic009G177500 Sobic009G177500 Sobic007G061000--Sobic009G177500 Sobic004G084300 Sobic004G084300 Sobic007G061000--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic007G061000--Sobic008G047800 Sobic006G118700 Sobic006G118700 Sobic007G061000--Sobic006G118700 Sobic009G179700 Sobic009G179700 Sobic007G061000--Sobic009G179700 Sobic002G134200 Sobic002G134200 Sobic007G061000--Sobic002G134200 Sobic007G157000 Sobic007G157000 Sobic007G061000--Sobic007G157000 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic006G040800 Sobic006G040800 Sobic008G002500--Sobic006G040800 Sobic001G063700 Sobic001G063700 Sobic008G002500--Sobic001G063700 Sobic001G354600 Sobic001G354600 Sobic008G002500--Sobic001G354600 Sobic003G360400 Sobic003G360400 Sobic008G002500--Sobic003G360400 Sobic009G088000 Sobic009G088000 Sobic008G002500--Sobic009G088000 Sobic003G188400 Sobic003G188400 Sobic008G002500--Sobic003G188400 Sobic008G002500--Sobic001G522600 Sobic001G433800 Sobic001G433800 Sobic008G002500--Sobic001G433800 Sobic004G332400 Sobic004G332400 Sobic008G002500--Sobic004G332400 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic009G095100--Sobic001G522600 Sobic009G095100--Sobic007G061000 Sobic003G029100 Sobic003G029100 Sobic009G095100--Sobic003G029100 Sobic003G143200 Sobic003G143200 Sobic009G095100--Sobic003G143200 Sobic009G095100--Sobic009G179700 Sobic008G112800 Sobic008G112800 Sobic009G095100--Sobic008G112800 Sobic004G266900 Sobic004G266900 Sobic009G095100--Sobic004G266900 Sobic008G153500 Sobic008G153500 Sobic009G095100--Sobic008G153500 Sobic004G092500 Sobic004G092500 Sobic009G095100--Sobic004G092500 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic008G014500--Sobic006G200700 Sobic008G014500--Sobic010G236400 Sobic002G275600 Sobic002G275600 Sobic008G014500--Sobic002G275600 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic008G014500--Sobic001G522600 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic006G200700--Sobic008G014500 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic004G277200 Sobic004G277200 Sobic006G200700--Sobic004G277200 Sobic006G200700--Sobic009G044800 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic009G044800--Sobic007G183900 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200
Octagon: transcription factors


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