Gene annotation
Transcriptome id Sobic.004G140600.1
Synonym Sb04g017420
Functional annotation exonuclease, putative, expressed
UniProt C5Y140
Pfam PF00929
Panther DB PTHR11046 PTHR11046:SF4
NCBI CDD KOG3242; Oligoribonuclease (3'->5' exoribonuclease)
KEGG Orthology K13288; orn, REX2, oligoribonuclease
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26970 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os02g26660.1 : exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a020300
Brachypodium KQJ99408 , KQJ99409 , KQJ99410 , KQJ99407 , KQJ99406
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G140600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
2 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
3 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
4 Sobic.009G132700 - -
5 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
6 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
7 Sobic.002G343901 - -
8 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
9 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
10 Sobic.001G456900 expressed protein -
11 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
12 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
13 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
14 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
15 Sobic.006G096900 expressed protein -
16 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
17 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
18 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
19 Sobic.010G143100 - -
20 Sobic.005G167700 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic004G140600 Sobic004G140600 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic009G177500 Sobic009G177500 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic010G139000 Sobic010G139000 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic001G227200--Sobic004G140600 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic001G227200--Sobic010G139000 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic009G177500--Sobic001G433800 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic009G177500--Sobic002G343901 Sobic008G063300--Sobic004G140600 Sobic008G063300--Sobic001G433800 Sobic006G096900 Sobic006G096900 Sobic008G063300--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic008G063300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic009G132700--Sobic001G455600 Sobic002G211800 Sobic002G211800 Sobic009G132700--Sobic002G211800 Sobic006G252900 Sobic006G252900 Sobic009G132700--Sobic006G252900 Sobic009G132700--Sobic001G433800 Sobic001G111850 Sobic001G111850 Sobic009G132700--Sobic001G111850 Sobic009G132700--Sobic003G188400 Sobic001G455600--Sobic004G140600 Sobic001G455600--Sobic009G132700 Sobic009G185700 Sobic009G185700 Sobic001G455600--Sobic009G185700 Sobic004G134200 Sobic004G134200 Sobic001G455600--Sobic004G134200 Sobic001G455600--Sobic010G139000 Sobic006G216100 Sobic006G216100 Sobic001G455600--Sobic006G216100 Sobic001G455600--Sobic001G456900 Sobic003G441900 Sobic003G441900 Sobic001G455600--Sobic003G441900 Sobic008G044100 Sobic008G044100 Sobic001G455600--Sobic008G044100 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic002G180666 Sobic002G180666 Sobic002G343901--Sobic002G180666 Sobic006G216800 Sobic006G216800 Sobic002G343901--Sobic006G216800 Sobic002G343901--Sobic009G177500 Sobic003G148000 Sobic003G148000 Sobic002G343901--Sobic003G148000 Sobic002G343901--Sobic001G227200 Sobic008G162900 Sobic008G162900 Sobic002G343901--Sobic008G162900 Sobic002G343901--Sobic004G140600 Sobic002G133400 Sobic002G133400 Sobic002G343901--Sobic002G133400 Sobic002G343901--Sobic005G112300 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600
Octagon: transcription factors


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