Gene annotation
Transcriptome id Sobic.006G185100.1
Synonym Sb06g025930
Functional annotation ranBP1 domain containing protein, expressed
UniProt A0A1B6PMN6
Pfam PF00638
Panther DB PTHR23138 PTHR23138:SF97
NCBI CDD KOG2724; Nuclear pore complex component NPAP60L/NUP50
KEGG Orthology K14295; NUP50, nuclear pore complex protein Nup50
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11790 : Pleckstrin homology (PH) domain superfamily protein
RAP-DB (Rice) LOC_Os03g46480.1 : ranBP1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010147
Brachypodium KQJ84124
Barley HORVU2Hr1G119540.7 , HORVU2Hr1G119540.8 , HORVU2Hr1G119540.4 , HORVU2Hr1G119540.5 , HORVU2Hr1G119540.6 , HORVU2Hr1G119540.1 , HORVU2Hr1G119540.2 , HORVU2Hr1G119540.10
Wheat TraesCS2D02G561000 , TraesCS2A02G593700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
2 Sobic.003G253600 protein kinase domain containing protein, expressed -
3 Sobic.002G257750 - -
4 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
5 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
6 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
7 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
9 Sobic.008G070800 expressed protein -
10 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
11 Sobic.003G247500 expressed protein -
12 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
13 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
14 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
15 Sobic.001G332500 WRKY81, expressed -
16 Sobic.001G303100 expressed protein -
17 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
18 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
19 Sobic.003G316500 expressed protein -
20 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -


Gene co-expression network
sample Sobic006G185100 Sobic006G185100 Sobic002G325300 Sobic002G325300 Sobic006G185100--Sobic002G325300 Sobic003G253600 Sobic003G253600 Sobic006G185100--Sobic003G253600 Sobic002G257750 Sobic002G257750 Sobic006G185100--Sobic002G257750 Sobic004G140600 Sobic004G140600 Sobic006G185100--Sobic004G140600 Sobic001G392300 Sobic001G392300 Sobic006G185100--Sobic001G392300 Sobic005G059800 Sobic005G059800 Sobic006G185100--Sobic005G059800 Sobic003G119600 Sobic003G119600 Sobic006G185100--Sobic003G119600 Sobic001G080700 Sobic001G080700 Sobic006G185100--Sobic001G080700 Sobic008G070800 Sobic008G070800 Sobic006G185100--Sobic008G070800 Sobic002G325300--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic002G325300--Sobic001G194200 Sobic006G252900 Sobic006G252900 Sobic002G325300--Sobic006G252900 Sobic003G247500 Sobic003G247500 Sobic002G325300--Sobic003G247500 Sobic002G325300--Sobic003G119600 Sobic006G041600 Sobic006G041600 Sobic002G325300--Sobic006G041600 Sobic008G001200 Sobic008G001200 Sobic002G325300--Sobic008G001200 Sobic004G244900 Sobic004G244900 Sobic002G325300--Sobic004G244900 Sobic009G256400 Sobic009G256400 Sobic002G325300--Sobic009G256400 Sobic003G253600--Sobic006G185100 Sobic003G253600--Sobic002G257750 Sobic003G253600--Sobic003G119600 Sobic002G344000 Sobic002G344000 Sobic003G253600--Sobic002G344000 Sobic001G332500 Sobic001G332500 Sobic003G253600--Sobic001G332500 Sobic003G316500 Sobic003G316500 Sobic003G253600--Sobic003G316500 Sobic003G155100 Sobic003G155100 Sobic003G253600--Sobic003G155100 Sobic003G253600--Sobic005G059800 Sobic008G044100 Sobic008G044100 Sobic003G253600--Sobic008G044100 Sobic003G398700 Sobic003G398700 Sobic002G257750--Sobic003G398700 Sobic005G106600 Sobic005G106600 Sobic002G257750--Sobic005G106600 Sobic002G257750--Sobic003G119600 Sobic002G257750--Sobic003G253600 Sobic002G257750--Sobic006G185100 Sobic003G388100 Sobic003G388100 Sobic002G257750--Sobic003G388100 Sobic006G050700 Sobic006G050700 Sobic002G257750--Sobic006G050700 Sobic002G257750--Sobic004G244900 Sobic010G132600 Sobic010G132600 Sobic002G257750--Sobic010G132600 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic009G177500 Sobic009G177500 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic010G139000 Sobic010G139000 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic010G032900 Sobic010G032900 Sobic005G059800--Sobic010G032900 Sobic002G294800 Sobic002G294800 Sobic005G059800--Sobic002G294800 Sobic005G059800--Sobic006G185100 Sobic005G059800--Sobic001G194200 Sobic005G059800--Sobic003G155100 Sobic003G011300 Sobic003G011300 Sobic005G059800--Sobic003G011300 Sobic005G059800--Sobic008G044100 Sobic005G059800--Sobic008G070800 Sobic005G059800--Sobic003G398700 Sobic009G201300 Sobic009G201300 Sobic003G119600--Sobic009G201300 Sobic001G439300 Sobic001G439300 Sobic003G119600--Sobic001G439300 Sobic003G119600--Sobic002G325300 Sobic003G119600--Sobic004G244900 Sobic003G119600--Sobic002G257750 Sobic003G119600--Sobic005G106600 Sobic004G356700 Sobic004G356700 Sobic003G119600--Sobic004G356700 Sobic003G119600--Sobic003G253600 Sobic003G354600 Sobic003G354600 Sobic003G119600--Sobic003G354600 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G080700--Sobic001G332500 Sobic001G080700--Sobic001G007000 Sobic008G070800--Sobic001G080700 Sobic008G070800--Sobic001G392300 Sobic008G070800--Sobic006G185100 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic008G070800--Sobic002G294800 Sobic001G333100 Sobic001G333100 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800
Octagon: transcription factors


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