Gene annotation
Transcriptome id Sobic.001G392300.1,Sobic.001G392300.2
Synonym Sb01g037170
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6QNL9 , A0A1B6QNM2
Pfam PF13401 PF00271 PF07717 PF04408 PF00271 PF07717 PF04408
Panther DB PTHR18934
NCBI CDD -
KEGG Orthology K12820; DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
Gene Ontology GO:0004386; helicase activity


Orthologs (automatic annotation)
TAIR AT3G62310 : RNA helicase family protein
RAP-DB (Rice) LOC_Os03g19960.1 : ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a002207 , Zm00025a052532
Brachypodium KQK21953 , KQK21954
Barley HORVU4Hr1G052730.3 , HORVU4Hr1G052730.2 , HORVU4Hr1G052730.1 , HORVU4Hr1G052730.5 , HORVU4Hr1G052730.4
Wheat TraesCS4D02G181700 , TraesCS4D02G181700 , TraesCS4A02G124200 , TraesCS4B02G180200 , TraesCS4B02G180200 , TraesCS4A02G124200
Populus -


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cDNA sequences
Sobic.001G392300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
2 Sobic.007G061000 mitotic checkpoint protein, putative, expressed K14298: RAE1, mRNA export factor
3 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
4 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
5 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
6 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
8 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
9 Sobic.006G200600 expressed protein -
10 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
11 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
12 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
13 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
14 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
15 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
16 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
17 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
18 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
19 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
20 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1


Gene co-expression network
sample Sobic001G392300 Sobic001G392300 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G080700--Sobic001G007000 Sobic007G061000--Sobic001G392300 Sobic001G522600 Sobic001G522600 Sobic007G061000--Sobic001G522600 Sobic007G061000--Sobic009G177500 Sobic004G084300 Sobic004G084300 Sobic007G061000--Sobic004G084300 Sobic007G061000--Sobic008G047800 Sobic006G118700 Sobic006G118700 Sobic007G061000--Sobic006G118700 Sobic009G179700 Sobic009G179700 Sobic007G061000--Sobic009G179700 Sobic002G134200 Sobic002G134200 Sobic007G061000--Sobic002G134200 Sobic007G157000 Sobic007G157000 Sobic007G061000--Sobic007G157000 Sobic001G433800 Sobic001G433800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic004G353200--Sobic006G200600 Sobic004G353200--Sobic001G392300 Sobic004G353200--Sobic007G075900 Sobic004G353200--Sobic001G007000 Sobic004G353200--Sobic004G066200 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic007G075900--Sobic004G084300 Sobic009G124700 Sobic009G124700 Sobic007G075900--Sobic009G124700 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic006G200600--Sobic001G392300 Sobic006G200600--Sobic010G251000 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200
Octagon: transcription factors


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