Gene annotation
Transcriptome id Sobic.007G061000.1,Sobic.007G061000.2
Synonym Sb07g004890
Functional annotation mitotic checkpoint protein, putative, expressed
UniProt A0A1B6PG21 , A0A1B6PFW6
Pfam PF00400
Panther DB PTHR10971 PTHR10971:SF16
NCBI CDD -
KEGG Orthology K14298; RAE1, mRNA export factor
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G80670 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os08g07960.2 : mitotic checkpoint protein, putative, expressed
MaizeGDB (Corn) Zm00025a054658 , Zm00025a028305
Brachypodium KQJ85746 , KQJ85745
Barley HORVU1Hr1G004960.5 , HORVU1Hr1G004960.7 , HORVU1Hr1G004960.2 , HORVU1Hr1G004960.4 , HORVU1Hr1G004960.6 , HORVU1Hr1G004960.1 , HORVU1Hr1G004960.3
Wheat TraesCS1B02G041300 , TraesCS1A02G033000 , TraesCS1D02G034200
Populus -


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cDNA sequences
Sobic.007G061000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
2 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
3 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
4 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
5 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
6 Sobic.006G118700 MYB family transcription factor, putative, expressed -
7 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
8 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
9 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
10 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
11 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
12 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
13 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
14 Sobic.007G078600 YT521-B, putative, expressed -
15 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.002G126500 RNA recognition motif containing protein, expressed -
18 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
19 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
20 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5


Gene co-expression network
sample Sobic007G061000 Sobic007G061000 Sobic001G392300 Sobic001G392300 Sobic007G061000--Sobic001G392300 Sobic001G522600 Sobic001G522600 Sobic007G061000--Sobic001G522600 Sobic009G177500 Sobic009G177500 Sobic007G061000--Sobic009G177500 Sobic004G084300 Sobic004G084300 Sobic007G061000--Sobic004G084300 Sobic008G047800 Sobic008G047800 Sobic007G061000--Sobic008G047800 Sobic006G118700 Sobic006G118700 Sobic007G061000--Sobic006G118700 Sobic009G179700 Sobic009G179700 Sobic007G061000--Sobic009G179700 Sobic002G134200 Sobic002G134200 Sobic007G061000--Sobic002G134200 Sobic007G157000 Sobic007G157000 Sobic007G061000--Sobic007G157000 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic001G522600--Sobic007G061000 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic010G236400 Sobic010G236400 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic008G014500 Sobic008G014500 Sobic001G522600--Sobic008G014500 Sobic006G200700 Sobic006G200700 Sobic001G522600--Sobic006G200700 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic001G433800 Sobic001G433800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic006G118700--Sobic007G183900 Sobic002G264200 Sobic002G264200 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic001G356600 Sobic001G356600 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic010G018700 Sobic010G018700 Sobic009G179700--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic009G179700--Sobic007G061000 Sobic009G179700--Sobic001G512700 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic010G139000 Sobic010G139000 Sobic007G157000--Sobic010G139000 Sobic001G311500 Sobic001G311500 Sobic007G157000--Sobic001G311500 Sobic007G157000--Sobic010G112100 Sobic007G157000--Sobic005G008800 Sobic004G314000 Sobic004G314000 Sobic007G157000--Sobic004G314000 Sobic009G109200 Sobic009G109200 Sobic007G157000--Sobic009G109200 Sobic001G219600 Sobic001G219600 Sobic007G157000--Sobic001G219600 Sobic002G397500 Sobic002G397500 Sobic007G157000--Sobic002G397500 Sobic003G408600 Sobic003G408600 Sobic007G157000--Sobic003G408600
Octagon: transcription factors


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