Gene annotation
Transcriptome id Sobic.002G134200.1
Synonym HIRA, Sb02g011930
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X5X4
Pfam PF00400 PF07569
Panther DB PTHR13831 PTHR13831:SF0
NCBI CDD -
KEGG Orthology K11293; HIRA, protein HIRA/HIR1
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0016568chromatin organization GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G44530 : homolog of histone chaperone HIRA
RAP-DB (Rice) LOC_Os09g39420.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023088 , Zm00025a046109
Brachypodium KQJ91583
Barley HORVU4Hr1G001430.1 , HORVU4Hr1G001430.2 , HORVU4Hr1G001430.3 , HORVU4Hr1G001430.4
Wheat TraesCS4B02G006700 , TraesCS4B02G006700 , TraesCS4D02G008400 , TraesCS4A02G304500 , TraesCS4A02G304500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
2 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
3 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
4 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
5 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
6 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
7 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
8 Sobic.009G191000 MATH domain containing protein, expressed -
9 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
10 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
11 Sobic.004G314000 expressed protein -
12 Sobic.010G010700 PHD-finger family protein, expressed -
13 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
15 Sobic.001G365900 PWWP domain containing protein, expressed -
16 Sobic.001G289600 BAH domain containing protein, putative, expressed -
17 Sobic.007G117400 expressed protein -
18 Sobic.003G372700 expressed protein -
19 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
20 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39


Gene co-expression network
sample Sobic002G134200 Sobic002G134200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic002G133400--Sobic006G216800 Sobic002G133400--Sobic002G134200 Sobic002G133400--Sobic002G006900 Sobic002G133400--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G133400--Sobic007G065400 Sobic002G133400--Sobic002G309600 Sobic002G133400--Sobic010G139000 Sobic001G036050 Sobic001G036050 Sobic002G133400--Sobic001G036050 Sobic006G048500 Sobic006G048500 Sobic002G133400--Sobic006G048500 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic001G540400 Sobic001G540400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900
Octagon: transcription factors


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