Gene annotation
Transcriptome id Sobic.007G117400.1
Synonym Sb07g019350
Functional annotation expressed protein
UniProt A0A1Z5RAG6
Pfam PF08642
Panther DB -
NCBI CDD KOG4843; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08450 : -
RAP-DB (Rice) LOC_Os07g29450.1 : expressed protein
MaizeGDB (Corn) Zm00025a030966 , Zm00025a015116
Brachypodium KQK15081
Barley HORVU3Hr1G023810.9 , HORVU3Hr1G023810.8 , HORVU3Hr1G023810.1 , HORVU3Hr1G023810.3 , HORVU3Hr1G023810.2 , HORVU3Hr1G023810.5 , HORVU3Hr1G023810.4 , HORVU3Hr1G023810.7 , HORVU3Hr1G023810.6 , HORVU3Hr1G023810.19 , HORVU3Hr1G023810.18 , HORVU3Hr1G023810.15 , HORVU3Hr1G023810.14 , HORVU3Hr1G023810.17 , HORVU3Hr1G023810.30 , HORVU3Hr1G023810.11 , HORVU3Hr1G023810.10 , HORVU3Hr1G023810.13 , HORVU3Hr1G023810.12 , HORVU3Hr1G023810.32 , HORVU3Hr1G023810.31 , HORVU3Hr1G023810.16 , HORVU3Hr1G023810.29 , HORVU3Hr1G023810.20 , HORVU3Hr1G023810.21 , HORVU3Hr1G023810.22 , HORVU3Hr1G023810.23 , HORVU3Hr1G023810.24 , HORVU3Hr1G023810.25 , HORVU3Hr1G023810.26 , HORVU3Hr1G023810.27
Wheat TraesCS3B02G146600 , TraesCS3B02G146600 , TraesCS3B02G146600 , TraesCS3D02G128600 , TraesCS3D02G128600 , TraesCS3A02G127400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
2 Sobic.001G241200 protein kinase domain containing protein, expressed -
3 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
4 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
5 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
6 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
8 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
9 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
10 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
11 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
12 Sobic.004G314000 expressed protein -
13 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
14 Sobic.001G363500 DIRP family protein, putative, expressed -
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
17 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
20 Sobic.001G289600 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G117400 Sobic007G117400 Sobic002G309600 Sobic002G309600 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic003G119000 Sobic003G119000 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic001G154900--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G154900--Sobic001G289600 Sobic001G154900--Sobic001G241200 Sobic010G069100 Sobic010G069100 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic001G154900--Sobic007G117400 Sobic001G154900--Sobic004G065100 Sobic001G154900--Sobic004G009600 Sobic007G105100 Sobic007G105100 Sobic001G154900--Sobic007G105100 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200
Octagon: transcription factors


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