Gene annotation
Transcriptome id Sobic.004G209600.1,Sobic.004G209600.2,Sobic.004G209600.4
Synonym Sb04g025520, FRS6
Functional annotation SWIM zinc finger family protein, putative, expressed
UniProt A0A194YQU3 , A0A194YRZ0
Pfam PF04434 PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G52520 : FAR1-related sequence 6
RAP-DB (Rice) LOC_Os02g39520.1,LOC_Os02g39520.2 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQK00267
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G209600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
2 Sobic.004G314000 expressed protein -
3 Sobic.010G010700 PHD-finger family protein, expressed -
4 Sobic.007G117400 expressed protein -
5 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
6 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
7 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
8 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
9 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
10 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
12 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
13 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
14 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
15 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
16 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
17 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
18 Sobic.001G241200 protein kinase domain containing protein, expressed -
19 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
20 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -


Gene co-expression network
sample Sobic004G209600 Sobic004G209600 Sobic010G139000 Sobic010G139000 Sobic004G209600--Sobic010G139000 Sobic004G314000 Sobic004G314000 Sobic004G209600--Sobic004G314000 Sobic010G010700 Sobic010G010700 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic005G008800 Sobic005G008800 Sobic004G209600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic004G209600--Sobic002G134200 Sobic005G112300 Sobic005G112300 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic003G280800 Sobic003G280800 Sobic004G209600--Sobic003G280800 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic004G065100 Sobic004G065100 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic001G154900 Sobic001G154900 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic001G540400 Sobic001G540400 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700
Octagon: transcription factors


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