Gene annotation
Transcriptome id Sobic.001G072500.3,Sobic.001G072500.7,Sobic.001G072500.2,Sobic.001G072500.4,Sobic.001G072500.6,Sobic.001G072500.5
Synonym THO2, Sb01g006520, AtTHO2
Functional annotation expressed protein
UniProt A0A1Z5S4P9 , A0A1B6QHQ2
Pfam PF11732 PF16134 PF11262
Panther DB PTHR21597 PTHR21597:SF0
NCBI CDD -
KEGG Orthology K12879; THO complex subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G24706 : THO2
RAP-DB (Rice) LOC_Os01g68810.1 : expressed protein
MaizeGDB (Corn) Zm00025a028049
Brachypodium KQK15799 , KQK15793 , KQK15792 , KQK15790 , KQK15797 , KQK15796 , KQK15795 , KQK11195 , KQK11194 , KQK11193 , KQK11192 , PNT74952 , KQK15800
Barley HORVU3Hr1G093430.49 , HORVU3Hr1G093430.48 , HORVU3Hr1G093430.41 , HORVU3Hr1G093430.40 , HORVU3Hr1G093430.43 , HORVU3Hr1G093430.42 , HORVU3Hr1G093430.45 , HORVU3Hr1G093430.44 , HORVU3Hr1G093430.47 , HORVU3Hr1G093430.46 , HORVU3Hr1G093430.8 , HORVU3Hr1G093430.9 , HORVU3Hr1G109960.8 , HORVU3Hr1G109960.9 , HORVU3Hr1G109960.6 , HORVU3Hr1G109960.7 , HORVU3Hr1G093430.2 , HORVU3Hr1G093430.3 , HORVU3Hr1G093430.4 , HORVU3Hr1G093430.5 , HORVU3Hr1G093430.6 , HORVU3Hr1G093430.7 , HORVU3Hr1G093430.58 , HORVU3Hr1G093430.59 , HORVU3Hr1G093430.56 , HORVU3Hr1G093430.57 , HORVU3Hr1G093430.54 , HORVU3Hr1G093430.55 , HORVU3Hr1G093430.52 , HORVU3Hr1G093430.53 , HORVU3Hr1G093430.50 , HORVU3Hr1G093430.51 , HORVU3Hr1G093430.29 , HORVU3Hr1G093430.28 , HORVU3Hr1G093430.23 , HORVU3Hr1G093430.22 , HORVU3Hr1G093430.21 , HORVU3Hr1G093430.20 , HORVU3Hr1G093430.27 , HORVU3Hr1G093430.26 , HORVU3Hr1G093430.25 , HORVU3Hr1G093430.24 , HORVU3Hr1G109960.21 , HORVU3Hr1G109960.20 , HORVU3Hr1G093430.38 , HORVU3Hr1G093430.39 , HORVU3Hr1G093430.30 , HORVU3Hr1G093430.31 , HORVU3Hr1G093430.32 , HORVU3Hr1G093430.33 , HORVU3Hr1G093430.34 , HORVU3Hr1G093430.35 , HORVU3Hr1G093430.36 , HORVU3Hr1G093430.37 , HORVU3Hr1G109960.14 , HORVU3Hr1G109960.15 , HORVU3Hr1G109960.16 , HORVU3Hr1G109960.17 , HORVU3Hr1G109960.10 , HORVU3Hr1G109960.4 , HORVU3Hr1G093430.71 , HORVU3Hr1G109960.5 , HORVU3Hr1G109960.12 , HORVU3Hr1G109960.2 , HORVU3Hr1G109960.13 , HORVU3Hr1G109960.3 , HORVU3Hr1G109960.1 , HORVU3Hr1G109960.18 , HORVU3Hr1G093430.81 , HORVU3Hr1G093430.12 , HORVU3Hr1G093430.13 , HORVU3Hr1G093430.10 , HORVU3Hr1G093430.11 , HORVU3Hr1G093430.16 , HORVU3Hr1G093430.17 , HORVU3Hr1G093430.14 , HORVU3Hr1G093430.15 , HORVU3Hr1G093430.18 , HORVU3Hr1G093430.19 , HORVU3Hr1G093380.4 , HORVU3Hr1G093380.5 , HORVU3Hr1G093380.2 , HORVU3Hr1G093380.3 , HORVU3Hr1G093380.1 , HORVU3Hr1G093430.67 , HORVU3Hr1G093430.66 , HORVU3Hr1G093430.65 , HORVU3Hr1G093430.64 , HORVU3Hr1G093430.63 , HORVU3Hr1G093430.62 , HORVU3Hr1G093430.61 , HORVU3Hr1G093430.60 , HORVU3Hr1G093430.69 , HORVU3Hr1G093430.68 , HORVU3Hr1G093430.74 , HORVU3Hr1G093430.75 , HORVU3Hr1G093430.76 , HORVU3Hr1G093430.77 , HORVU3Hr1G093430.70 , HORVU3Hr1G109960.11 , HORVU3Hr1G093430.72 , HORVU3Hr1G093430.73 , HORVU3Hr1G093430.78 , HORVU3Hr1G109960.19
Wheat TraesCS3A02G422800 , TraesCS3A02G422800 , TraesCS3B02G458100 , TraesCS3D02G504300 , TraesCS3D02G504300 , TraesCS3D02G504300 , TraesCS3D02G418000 , TraesCS3D02G418000 , TraesCS3D02G418000 , TraesCS3B02G558300 , TraesCS3B02G558300 , TraesCS3A02G496300 , TraesCS3A02G496300 , TraesCS3A02G496300 , TraesCS3A02G496300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G169633 - -
2 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
3 Sobic.004G263600 - K03655: ATP-dependent DNA helicase RecG
4 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
5 Sobic.002G316600 expressed protein -
6 Sobic.004G314000 expressed protein -
7 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
8 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
9 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
10 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
11 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
12 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
13 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.008G016300 expressed protein -
15 Sobic.004G023000 SAC9, putative, expressed -
16 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
17 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
19 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
20 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G072500 Sobic001G072500 Sobic002G169633 Sobic002G169633 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic004G263600 Sobic004G263600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic002G316600 Sobic002G316600 Sobic001G072500--Sobic002G316600 Sobic004G314000 Sobic004G314000 Sobic001G072500--Sobic004G314000 Sobic006G131500 Sobic006G131500 Sobic001G072500--Sobic006G131500 Sobic010G206900 Sobic010G206900 Sobic001G072500--Sobic010G206900 Sobic010G139000 Sobic010G139000 Sobic001G072500--Sobic010G139000 Sobic002G169633--Sobic001G072500 Sobic005G032800 Sobic005G032800 Sobic002G169633--Sobic005G032800 Sobic004G359800 Sobic004G359800 Sobic002G169633--Sobic004G359800 Sobic002G169633--Sobic004G263600 Sobic004G174200 Sobic004G174200 Sobic002G169633--Sobic004G174200 Sobic010G239600 Sobic010G239600 Sobic002G169633--Sobic010G239600 Sobic007G020500 Sobic007G020500 Sobic002G169633--Sobic007G020500 Sobic002G169633--Sobic006G131500 Sobic007G193700 Sobic007G193700 Sobic002G169633--Sobic007G193700 Sobic003G401600--Sobic004G314000 Sobic005G008800 Sobic005G008800 Sobic003G401600--Sobic005G008800 Sobic003G401600--Sobic001G072500 Sobic003G401600--Sobic010G206900 Sobic003G401600--Sobic010G139000 Sobic003G401600--Sobic004G209600 Sobic007G161000 Sobic007G161000 Sobic003G401600--Sobic007G161000 Sobic003G252100 Sobic003G252100 Sobic003G401600--Sobic003G252100 Sobic008G192600 Sobic008G192600 Sobic003G401600--Sobic008G192600 Sobic004G263600--Sobic007G193700 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic010G010700 Sobic010G010700 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic002G134200 Sobic002G134200 Sobic004G209600--Sobic002G134200 Sobic005G112300 Sobic005G112300 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic003G280800 Sobic003G280800 Sobic004G209600--Sobic003G280800 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic006G131500--Sobic005G008800 Sobic001G498600 Sobic001G498600 Sobic006G131500--Sobic001G498600 Sobic006G131500--Sobic004G209600 Sobic006G131500--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic006G131500--Sobic002G134200 Sobic001G146800 Sobic001G146800 Sobic006G131500--Sobic001G146800 Sobic006G131500--Sobic001G072500 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.