Gene annotation
Transcriptome id Sobic.004G263600.2,Sobic.004G263600.1
Synonym
Functional annotation -
UniProt A0A194YRN7
Pfam PF00270 PF00271
Panther DB PTHR24031 PTHR24031:SF50
NCBI CDD KOG0344; ATP-dependent RNA helicase
KEGG Orthology K03655; ATP-dependent DNA helicase RecG
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G01440 : DEAD/DEAH box RNA helicase family protein
RAP-DB (Rice) LOC_Os02g48100.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a021761
Brachypodium KQK00983 , KQK00984 , KQK00985
Barley -
Wheat TraesCS6A02G276600 , TraesCS6A02G276600 , TraesCS6B02G304100 , TraesCS6B02G304100 , TraesCS6D02G256900 , TraesCS6D02G256900 , TraesCS6D02G256900 , TraesCS6D02G256900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
2 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
3 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
4 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
5 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
6 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
9 Sobic.004G023000 SAC9, putative, expressed -
10 Sobic.001G289800 BAH domain containing protein, putative, expressed -
11 Sobic.010G010700 PHD-finger family protein, expressed -
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
14 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
15 Sobic.002G316600 expressed protein -
16 Sobic.003G247500 expressed protein -
17 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
19 Sobic.008G087866 - -
20 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1


Gene co-expression network
sample Sobic004G263600 Sobic004G263600 Sobic007G193700 Sobic007G193700 Sobic004G263600--Sobic007G193700 Sobic004G174200 Sobic004G174200 Sobic004G263600--Sobic004G174200 Sobic001G194200 Sobic001G194200 Sobic004G263600--Sobic001G194200 Sobic006G055200 Sobic006G055200 Sobic004G263600--Sobic006G055200 Sobic004G291900 Sobic004G291900 Sobic004G263600--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic004G263600--Sobic005G001000 Sobic008G001200 Sobic008G001200 Sobic004G263600--Sobic008G001200 Sobic001G072500 Sobic001G072500 Sobic004G263600--Sobic001G072500 Sobic004G023000 Sobic004G023000 Sobic004G263600--Sobic004G023000 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic007G193700--Sobic004G174200 Sobic002G134200 Sobic002G134200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic004G174200--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic003G422500 Sobic003G422500 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic006G055200--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic006G055200--Sobic003G186000 Sobic006G055200--Sobic001G289800 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic008G001200--Sobic004G174200 Sobic002G169633 Sobic002G169633 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic002G316600 Sobic002G316600 Sobic001G072500--Sobic002G316600 Sobic004G314000 Sobic004G314000 Sobic001G072500--Sobic004G314000 Sobic006G131500 Sobic006G131500 Sobic001G072500--Sobic006G131500 Sobic001G072500--Sobic010G206900 Sobic010G139000 Sobic010G139000 Sobic001G072500--Sobic010G139000 Sobic009G165700 Sobic009G165700 Sobic004G023000--Sobic009G165700 Sobic010G247800 Sobic010G247800 Sobic004G023000--Sobic010G247800 Sobic003G095900 Sobic003G095900 Sobic004G023000--Sobic003G095900 Sobic004G023000--Sobic004G314000 Sobic004G023000--Sobic009G256400 Sobic004G023000--Sobic010G139000 Sobic002G211800 Sobic002G211800 Sobic004G023000--Sobic002G211800 Sobic004G023000--Sobic004G263600 Sobic004G023000--Sobic010G206900
Octagon: transcription factors


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