Gene annotation
Transcriptome id Sobic.004G291900.3,Sobic.004G291900.1,Sobic.004G291900.4
Synonym ESP4
Functional annotation ESP4, putative, expressed
UniProt A0A194YTB2 , A0A1Z5RQL2 , A0A1Z5RQG4
Pfam PF12295 PF11935 PF12295
Panther DB PTHR15245 PTHR15245:SF20
NCBI CDD KOG1895; mRNA cleavage and polyadenylation factor II complex, subunit PTA1
KEGG Orthology K06100; symplekin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G27595 : HEAT repeat-containing protein
RAP-DB (Rice) LOC_Os01g49940.1 : ESP4, putative, expressed
MaizeGDB (Corn) Zm00025a027923
Brachypodium KQK09305 , KQK09304 , KQK09306 , PNT72636
Barley HORVU3Hr1G064850.19 , HORVU3Hr1G064850.12 , HORVU3Hr1G064850.13 , HORVU3Hr1G064850.10 , HORVU3Hr1G064850.11 , HORVU3Hr1G064850.17 , HORVU3Hr1G064850.14 , HORVU3Hr1G064850.15 , HORVU3Hr1G064850.18 , HORVU3Hr1G064850.16 , HORVU6Hr1G076290.1 , HORVU3Hr1G064850.1 , HORVU3Hr1G064850.2 , HORVU3Hr1G064850.3 , HORVU3Hr1G064850.4 , HORVU3Hr1G064850.5 , HORVU3Hr1G064850.7 , HORVU3Hr1G064850.8 , HORVU3Hr1G064850.9 , HORVU6Hr1G076270.4 , HORVU6Hr1G076270.2 , HORVU3Hr1G064850.23 , HORVU3Hr1G064850.22 , HORVU3Hr1G064850.21 , HORVU3Hr1G064850.20 , HORVU3Hr1G064850.27 , HORVU3Hr1G064850.26 , HORVU3Hr1G064850.25 , HORVU3Hr1G064850.24 , HORVU3Hr1G064850.28
Wheat TraesCS3A02G259200 , TraesCS3A02G259200 , TraesCS3B02G292200 , TraesCS3D02G259300 , TraesCS3D02G259300
Populus -


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cDNA sequences
Sobic.004G291900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
2 Sobic.001G289800 BAH domain containing protein, putative, expressed -
3 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
6 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
8 Sobic.001G002000 protein kinase domain containing protein, expressed -
9 Sobic.010G010700 PHD-finger family protein, expressed -
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
12 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
13 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
14 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
15 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
16 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
17 Sobic.003G422500 expressed protein -
18 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
19 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26


Gene co-expression network
sample Sobic004G291900 Sobic004G291900 Sobic001G194200 Sobic001G194200 Sobic004G291900--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G276400 Sobic004G276400 Sobic004G291900--Sobic004G276400 Sobic005G001000 Sobic005G001000 Sobic004G291900--Sobic005G001000 Sobic004G034900 Sobic004G034900 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic004G291900--Sobic010G010700 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic004G174200--Sobic004G291900 Sobic002G411600 Sobic002G411600 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic004G174200--Sobic002G008900 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic001G370900 Sobic001G370900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic003G166750 Sobic003G166750 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G002000--Sobic001G289600 Sobic001G002000--Sobic002G411600 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000
Octagon: transcription factors


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