Gene annotation
Transcriptome id Sobic.010G247800.1
Synonym RDO4, HUB1
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z8U7
Pfam PF13923
Panther DB PTHR23163 PTHR23163:SF3
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology K10696; E3 ubiquitin-protein ligase BRE1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44950 : histone mono-ubiquitination 1
RAP-DB (Rice) LOC_Os04g46450.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014687 , Zm00025a036543 , Zm00025a055691 , Zm00025a041799 , Zm00025a018331 , Zm00025a028157
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
2 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
3 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
4 Sobic.003G422500 expressed protein -
5 Sobic.009G191000 MATH domain containing protein, expressed -
6 Sobic.001G002000 protein kinase domain containing protein, expressed -
7 Sobic.001G363500 DIRP family protein, putative, expressed -
8 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
9 Sobic.002G405800 PHD-finger family protein, expressed -
10 Sobic.007G062800 SET domain containing protein, expressed -
11 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.001G289800 BAH domain containing protein, putative, expressed -
13 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
14 Sobic.010G010700 PHD-finger family protein, expressed -
15 Sobic.003G196300 DNA binding protein, putative, expressed -
16 Sobic.001G365900 PWWP domain containing protein, expressed -
17 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
18 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
19 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
20 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C


Gene co-expression network
sample Sobic010G247800 Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic010G247800--Sobic010G206900 Sobic009G165700 Sobic009G165700 Sobic010G247800--Sobic009G165700 Sobic002G411600 Sobic002G411600 Sobic010G247800--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic010G247800--Sobic003G422500 Sobic009G191000 Sobic009G191000 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic001G363500 Sobic001G363500 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic002G405800 Sobic002G405800 Sobic010G247800--Sobic002G405800 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic001G194200 Sobic001G194200 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic001G002000--Sobic003G422500 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G002000--Sobic001G289600 Sobic001G002000--Sobic002G411600 Sobic005G112300 Sobic005G112300 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G276400 Sobic004G276400 Sobic004G291900--Sobic004G276400 Sobic005G001000 Sobic005G001000 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic002G405800--Sobic007G062800 Sobic002G405800--Sobic005G112300 Sobic002G404700 Sobic002G404700 Sobic002G405800--Sobic002G404700 Sobic002G405800--Sobic010G010700 Sobic002G405800--Sobic010G279450 Sobic002G405800--Sobic002G008900 Sobic002G405800--Sobic004G034900 Sobic002G405800--Sobic001G289600 Sobic002G405800--Sobic010G247800
Octagon: transcription factors


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