Gene annotation
Transcriptome id Sobic.002G405800.2,Sobic.002G405800.1
Synonym Sb02g042000
Functional annotation PHD-finger family protein, expressed
UniProt A0A1B6QG14
Pfam PF00628 PF02791
Panther DB PTHR22880 PTHR22880:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G22760 : PHD finger family protein
RAP-DB (Rice) LOC_Os07g46690.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a049049
Brachypodium PNT74610 , PNT74609 , PNT74608
Barley HORVU2Hr1G022310.1 , HORVU2Hr1G022310.4 , HORVU2Hr1G022310.2 , HORVU2Hr1G022310.3
Wheat TraesCS2A02G126900 , TraesCS2D02G129400 , TraesCS2B02G148800
Populus -


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cDNA sequences
Sobic.002G405800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G062800 SET domain containing protein, expressed -
2 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
3 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
4 Sobic.010G010700 PHD-finger family protein, expressed -
5 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
7 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
8 Sobic.001G289600 BAH domain containing protein, putative, expressed -
9 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
12 Sobic.001G540400 expressed protein -
13 Sobic.009G191000 MATH domain containing protein, expressed -
14 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
15 Sobic.001G363500 DIRP family protein, putative, expressed -
16 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
17 Sobic.003G422500 expressed protein -
18 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
19 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
20 Sobic.001G365900 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic002G405800 Sobic002G405800 Sobic007G062800 Sobic007G062800 Sobic002G405800--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G405800--Sobic005G112300 Sobic002G404700 Sobic002G404700 Sobic002G405800--Sobic002G404700 Sobic010G010700 Sobic010G010700 Sobic002G405800--Sobic010G010700 Sobic010G279450 Sobic010G279450 Sobic002G405800--Sobic010G279450 Sobic002G008900 Sobic002G008900 Sobic002G405800--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G405800--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic002G405800--Sobic001G289600 Sobic010G247800 Sobic010G247800 Sobic002G405800--Sobic010G247800 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic002G404700--Sobic002G405800 Sobic003G059750 Sobic003G059750 Sobic002G404700--Sobic003G059750 Sobic002G309600 Sobic002G309600 Sobic002G404700--Sobic002G309600 Sobic007G126600 Sobic007G126600 Sobic002G404700--Sobic007G126600 Sobic004G314000 Sobic004G314000 Sobic002G404700--Sobic004G314000 Sobic002G404700--Sobic005G112300 Sobic002G404700--Sobic010G279450 Sobic003G119000 Sobic003G119000 Sobic002G404700--Sobic003G119000 Sobic001G241200 Sobic001G241200 Sobic002G404700--Sobic001G241200 Sobic010G206900 Sobic010G206900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic010G279450--Sobic002G405800 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic008G028700 Sobic008G028700 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G279450--Sobic010G247800 Sobic009G191000 Sobic009G191000 Sobic002G008900--Sobic009G191000 Sobic002G411600 Sobic002G411600 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic001G289600--Sobic005G008800 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic010G247800--Sobic010G206900 Sobic009G165700 Sobic009G165700 Sobic010G247800--Sobic009G165700 Sobic010G247800--Sobic002G411600 Sobic010G247800--Sobic003G422500 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic010G247800--Sobic002G405800
Octagon: transcription factors


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