Gene annotation
Transcriptome id Sobic.010G279450.1
Synonym -
Functional annotation -
UniProt A0A1W0VV88
Pfam PF01388 PF02928 PF02375 PF00628 PF08429 PF02373
Panther DB PTHR10694 PTHR10694:SF8
NCBI CDD -
KEGG Orthology K11446; KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
Gene Ontology GO:0003677; DNA binding GO:0005515protein binding GO:00167062-oxoglutarate-dependent dioxygenase activity


Orthologs (automatic annotation)
TAIR AT1G63490 : transcription factor jumonji (jmjC) domain-containing protein
RAP-DB (Rice) LOC_Os06g51490.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK16558 , KQK16559 , KQK16557
Barley HORVU7Hr1G122370.4 , HORVU7Hr1G122370.5 , HORVU7Hr1G122370.6 , HORVU7Hr1G122370.7 , HORVU7Hr1G122370.1 , HORVU7Hr1G122370.2 , HORVU7Hr1G122370.3 , HORVU7Hr1G122370.8 , HORVU7Hr1G122370.9 , HORVU7Hr1G122370.16 , HORVU7Hr1G122370.17 , HORVU7Hr1G122370.14 , HORVU7Hr1G122370.15 , HORVU7Hr1G122370.12 , HORVU7Hr1G122370.13 , HORVU7Hr1G122370.10 , HORVU7Hr1G122370.11 , HORVU7Hr1G122370.18 , HORVU7Hr1G122370.19 , HORVU7Hr1G122370.29 , HORVU7Hr1G122370.28 , HORVU7Hr1G122370.27 , HORVU7Hr1G122370.26 , HORVU7Hr1G122370.25 , HORVU7Hr1G122370.24 , HORVU7Hr1G122370.23 , HORVU7Hr1G122370.22 , HORVU7Hr1G122370.21 , HORVU7Hr1G122370.20 , HORVU7Hr1G122370.36 , HORVU7Hr1G122370.34 , HORVU7Hr1G122370.35 , HORVU7Hr1G122370.37 , HORVU7Hr1G122370.30 , HORVU7Hr1G122370.31 , HORVU7Hr1G122370.32 , HORVU7Hr1G122370.33
Wheat TraesCS7D02G544800 , TraesCS7D02G544800 , TraesCS7B02G492100 , TraesCS7B02G492100 , TraesCS7A02G566000
Populus PNS22750 , PNT59911 , PNT13662 , PNT13663 , PNT13661


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
3 Sobic.002G405800 PHD-finger family protein, expressed -
4 Sobic.004G314000 expressed protein -
5 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
6 Sobic.008G028700 SET domain containing protein, expressed -
7 Sobic.001G363500 DIRP family protein, putative, expressed -
8 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
9 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
10 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
11 Sobic.007G062800 SET domain containing protein, expressed -
12 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
13 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
14 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
15 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
16 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
17 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
18 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
19 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
20 Sobic.001G241200 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic010G279450 Sobic010G279450 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G139000 Sobic010G139000 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic008G028700 Sobic008G028700 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic002G405800--Sobic007G062800 Sobic002G405800--Sobic005G112300 Sobic002G404700 Sobic002G404700 Sobic002G405800--Sobic002G404700 Sobic002G405800--Sobic010G010700 Sobic002G405800--Sobic010G279450 Sobic002G008900 Sobic002G008900 Sobic002G405800--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G405800--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic002G405800--Sobic001G289600 Sobic002G405800--Sobic010G247800 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic007G103600 Sobic007G103600 Sobic003G059750--Sobic007G103600 Sobic005G207500 Sobic005G207500 Sobic003G059750--Sobic005G207500 Sobic003G059750--Sobic005G112300 Sobic003G059750--Sobic010G279450 Sobic003G059750--Sobic002G404700 Sobic003G444800 Sobic003G444800 Sobic003G059750--Sobic003G444800 Sobic003G059750--Sobic001G311500 Sobic003G059750--Sobic002G405800 Sobic003G059750--Sobic002G071500 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic001G363500--Sobic005G112300 Sobic001G363500--Sobic007G062800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic001G363500--Sobic010G112100 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic010G247800--Sobic010G206900 Sobic009G165700 Sobic009G165700 Sobic010G247800--Sobic009G165700 Sobic002G411600 Sobic002G411600 Sobic010G247800--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic010G247800--Sobic003G422500 Sobic009G191000 Sobic009G191000 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic010G247800--Sobic002G405800
Octagon: transcription factors


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