Gene annotation
Transcriptome id Sobic.001G241200.7,Sobic.001G241200.1,Sobic.001G241200.3,Sobic.001G241200.5,Sobic.001G241200.6,Sobic.001G241200.8
Synonym EDR1, ATEDR1, Sb01g021350
Functional annotation protein kinase domain containing protein, expressed
UniProt A0A1Z5S737 , A0A1B6QKP0 , A0A1B6QKP3 , A0A1Z5S7D2 , C5X1D6
Pfam PF14381 PF14381 PF07714 PF07714 PF14381 PF07714
Panther DB PTHR23257 PTHR23257:SF335 PTHR23257 PTHR23257:SF431
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G08720 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os03g06410.1,LOC_Os10g29540.1 : protein kinase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053452
Brachypodium KQJ96788 , KQK23540
Barley HORVU1Hr1G035440.12 , HORVU1Hr1G035440.11 , HORVU1Hr1G035440.10 , HORVU4Hr1G073290.12 , HORVU1Hr1G035440.9 , HORVU1Hr1G035440.8 , HORVU1Hr1G035440.3 , HORVU1Hr1G035440.2 , HORVU1Hr1G035440.7 , HORVU1Hr1G035440.6 , HORVU1Hr1G035440.5 , HORVU1Hr1G035440.4 , HORVU4Hr1G073290.9 , HORVU4Hr1G073290.8 , HORVU4Hr1G073290.5 , HORVU4Hr1G073290.4 , HORVU4Hr1G073290.7 , HORVU4Hr1G073290.6 , HORVU4Hr1G073290.1 , HORVU4Hr1G073290.3 , HORVU4Hr1G073290.2
Wheat TraesCS4A02G029800 , TraesCS4A02G029800 , TraesCS4D02G274400 , TraesCS4D02G274400 , TraesCS1B02G154400 , TraesCS4B02G276200 , TraesCS4B02G276200 , TraesCS1A02G131600 , TraesCS1D02G136400 , TraesCS1D02G136400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G117400 expressed protein -
2 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
3 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
4 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
5 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
6 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
8 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
9 Sobic.001G540400 expressed protein -
10 Sobic.001G363500 DIRP family protein, putative, expressed -
11 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
12 Sobic.004G314000 expressed protein -
13 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
14 Sobic.010G069100 expressed protein -
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
17 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
18 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
19 Sobic.003G372700 expressed protein -
20 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A


Gene co-expression network
sample Sobic001G241200 Sobic001G241200 Sobic007G117400 Sobic007G117400 Sobic001G241200--Sobic007G117400 Sobic005G112300 Sobic005G112300 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic002G309600 Sobic002G309600 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic008G009700 Sobic008G009700 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic003G119000 Sobic003G119000 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic001G289600 Sobic001G289600 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic001G289800 Sobic001G289800 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic008G009700--Sobic002G309600 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic001G154900--Sobic002G309600 Sobic001G154900--Sobic001G289600 Sobic001G154900--Sobic001G241200 Sobic010G069100 Sobic010G069100 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic001G154900--Sobic007G117400 Sobic001G154900--Sobic004G065100 Sobic001G154900--Sobic004G009600 Sobic001G154900--Sobic007G105100 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic004G034900 Sobic004G034900 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100
Octagon: transcription factors


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