Gene annotation
Transcriptome id Sobic.004G065100.2,Sobic.004G065100.1
Synonym
Functional annotation RNA recognition motif, putative, expressed
UniProt C5XWU9
Pfam PF04818 PF08312 PF00076 PF01805
Panther DB PTHR23140
NCBI CDD -
KEGG Orthology K12842; U2-associated protein SR140
Gene Ontology GO:0003676; nucleic acid binding GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G25060 : RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os02g08360.1 : RNA recognition motif, putative, expressed
MaizeGDB (Corn) Zm00025a019212 , Zm00025a019209
Brachypodium KQJ93647 , KQJ93648 , KQJ93649 , KQJ97564 , PNT67764 , PNT67765
Barley HORVU6Hr1G029290.23 , HORVU6Hr1G029290.20 , HORVU6Hr1G029290.27 , HORVU6Hr1G029290.26 , HORVU6Hr1G029290.25 , HORVU6Hr1G029290.24 , HORVU6Hr1G029290.28 , HORVU6Hr1G029290.1 , HORVU6Hr1G029290.5 , HORVU6Hr1G029290.7 , HORVU6Hr1G029290.22 , HORVU6Hr1G029290.21 , HORVU6Hr1G029290.2 , HORVU6Hr1G029290.3 , HORVU6Hr1G029290.4 , HORVU6Hr1G029290.6 , HORVU6Hr1G029290.8 , HORVU6Hr1G029290.9 , HORVU6Hr1G029290.18 , HORVU6Hr1G029290.19 , HORVU6Hr1G029290.12 , HORVU6Hr1G029290.13 , HORVU6Hr1G029290.10 , HORVU6Hr1G029290.11 , HORVU6Hr1G029290.16 , HORVU6Hr1G029290.17 , HORVU6Hr1G029290.14 , HORVU6Hr1G029290.15
Wheat TraesCS6B02G176700 , TraesCS6B02G176700 , TraesCS6B02G176700 , TraesCS6B02G176700 , TraesCS6D02G137800 , TraesCS6D02G137800 , TraesCS6D02G137800 , TraesCS6D02G137800 , TraesCS6D02G137800 , TraesCS6D02G137800 , TraesCS1A02G185900 , TraesCS1A02G185900 , TraesCS1A02G185900 , TraesCS1A02G185900 , TraesCS1A02G185900 , TraesCS6A02G148500 , TraesCS6A02G148500 , TraesCS6A02G148500 , TraesCS1D02G190900 , TraesCS1B02G193700 , TraesCS1B02G193700 , TraesCS1D02G190900 , TraesCS1B02G193700 , TraesCS1D02G190900 , TraesCS1D02G190900 , TraesCS1D02G190900
Populus -


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cDNA sequences
Sobic.004G065100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G241200 protein kinase domain containing protein, expressed -
2 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
3 Sobic.007G117400 expressed protein -
4 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
6 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
7 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
8 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A
9 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
10 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
11 Sobic.004G314000 expressed protein -
12 Sobic.003G422500 expressed protein -
13 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
14 Sobic.001G540400 expressed protein -
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
17 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
18 Sobic.001G363500 DIRP family protein, putative, expressed -
19 Sobic.010G069100 expressed protein -
20 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein


Gene co-expression network
sample Sobic004G065100 Sobic004G065100 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic002G309600 Sobic002G309600 Sobic004G065100--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic005G008800 Sobic005G008800 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic005G112300 Sobic005G112300 Sobic004G065100--Sobic005G112300 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic008G009700 Sobic008G009700 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic002G309600--Sobic004G065100 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic005G027400--Sobic002G309600 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic001G154900--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G154900--Sobic001G289600 Sobic001G154900--Sobic001G241200 Sobic010G069100 Sobic010G069100 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic001G154900--Sobic007G117400 Sobic001G154900--Sobic004G065100 Sobic001G154900--Sobic004G009600 Sobic007G105100 Sobic007G105100 Sobic001G154900--Sobic007G105100 Sobic005G008800--Sobic001G540400 Sobic003G408600 Sobic003G408600 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic004G314000 Sobic004G314000 Sobic005G008800--Sobic004G314000 Sobic005G008800--Sobic008G009700 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic005G104500--Sobic004G065100 Sobic005G104500--Sobic002G309600 Sobic005G104500--Sobic001G241200 Sobic009G138800 Sobic009G138800 Sobic005G104500--Sobic009G138800 Sobic005G104500--Sobic002G006900 Sobic005G104500--Sobic003G280800 Sobic005G104500--Sobic003G119000 Sobic005G104500--Sobic007G126600 Sobic005G104500--Sobic007G117400 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500
Octagon: transcription factors


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