Gene annotation
Transcriptome id Sobic.003G280800.20,Sobic.003G280800.5,Sobic.003G280800.16,Sobic.003G280800.13,Sobic.003G280800.18,Sobic.003G280800.17,Sobic.003G280800.19,Sobic.003G280800.14,Sobic.003G280800.15
Synonym SUA, Sb03g033240
Functional annotation RNA recognition motif family protein, expressed
UniProt A0A1B6Q5T6 , A0A1W0VZA5 , A0A1W0VZA4 , A0A1W0VZ92 , A0A1W0VZ99 , A0A1B6Q5U7 , A0A1B6Q5T7 , A0A1B6Q5T5
Pfam PF01585 PF00076
Panther DB PTHR13948 PTHR13948:SF3
NCBI CDD KOG0154; RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains
KEGG Orthology K13094; RNA-binding protein 5/10
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G54230 : suppressor of abi3-5
RAP-DB (Rice) LOC_Os02g07070.1 : RNA recognition motif family protein, expressed
MaizeGDB (Corn) Zm00025a038995 , Zm00025a045835
Brachypodium KQK08667 , KQK08668
Barley HORVU3Hr1G089330.18 , HORVU3Hr1G089330.12 , HORVU3Hr1G089330.10 , HORVU3Hr1G089330.11 , HORVU3Hr1G089330.16 , HORVU3Hr1G089330.17 , HORVU3Hr1G089330.14 , HORVU3Hr1G089330.1 , HORVU3Hr1G089330.4 , HORVU3Hr1G089330.5 , HORVU3Hr1G089330.6 , HORVU3Hr1G089330.7 , HORVU3Hr1G089330.8 , HORVU3Hr1G089330.41 , HORVU3Hr1G089330.43 , HORVU3Hr1G089330.42 , HORVU3Hr1G089330.44 , HORVU3Hr1G089330.46 , HORVU3Hr1G089330.23 , HORVU3Hr1G089330.22 , HORVU3Hr1G089330.21 , HORVU3Hr1G089330.20 , HORVU3Hr1G089330.27 , HORVU3Hr1G089330.26 , HORVU3Hr1G089330.25 , HORVU3Hr1G089330.29 , HORVU3Hr1G089330.28 , HORVU3Hr1G089330.31 , HORVU3Hr1G089330.32 , HORVU3Hr1G089330.33 , HORVU3Hr1G089330.35 , HORVU3Hr1G089330.37 , HORVU3Hr1G089330.38
Wheat TraesCS3B02G428300 , TraesCS3D02G390300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
2 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
3 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
4 Sobic.006G209850 - -
5 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
6 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
7 Sobic.007G117400 expressed protein -
8 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
9 Sobic.003G372700 expressed protein -
10 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.010G277500 expressed protein -
12 Sobic.001G241200 protein kinase domain containing protein, expressed -
13 Sobic.007G096000 expressed protein -
14 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
15 Sobic.K042000 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
16 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
17 Sobic.002G053000 expressed protein -
18 Sobic.001G287201 - -
19 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
20 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140


Gene co-expression network
sample Sobic003G280800 Sobic003G280800 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic008G047800 Sobic008G047800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic002G008900 Sobic002G008900 Sobic001G071400--Sobic002G008900 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic006G128900 Sobic006G128900 Sobic006G209850--Sobic006G128900 Sobic001G511500 Sobic001G511500 Sobic006G209850--Sobic001G511500 Sobic006G209850--Sobic003G280800 Sobic010G277500 Sobic010G277500 Sobic006G209850--Sobic010G277500 Sobic008G024600 Sobic008G024600 Sobic006G209850--Sobic008G024600 Sobic002G053000 Sobic002G053000 Sobic006G209850--Sobic002G053000 Sobic010G129200 Sobic010G129200 Sobic006G209850--Sobic010G129200 Sobic004G145500 Sobic004G145500 Sobic006G209850--Sobic004G145500 Sobic002G243900 Sobic002G243900 Sobic006G209850--Sobic002G243900 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic001G474600--Sobic009G191000 Sobic001G474600--Sobic001G241200 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic006G216800--Sobic010G277500 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic003G372700--Sobic005G112300 Sobic002G191800 Sobic002G191800 Sobic003G372700--Sobic002G191800 Sobic003G372700--Sobic009G040600 Sobic003G372700--Sobic002G309600 Sobic003G372700--Sobic003G280800 Sobic003G372700--Sobic001G474600
Octagon: transcription factors


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