Gene annotation
Transcriptome id Sobic.003G119000.1
Synonym XRN3, AtXRN3, Sb03g010040
Functional annotation XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
UniProt C5XGF0
Pfam PF03159 PF00098
Panther DB PTHR12341:SF30 PTHR12341
NCBI CDD -
KEGG Orthology K12619; XRN2, 5'-3' exoribonuclease 2
Gene Ontology GO:0004527; exonuclease activity GO:0003676nucleic acid binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G75660 : 5\'-3\' exoribonuclease 3
RAP-DB (Rice) LOC_Os01g65220.1 : XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023976 , Zm00025a029985 , Zm00025a016583
Brachypodium PNT73282 , PNT73283
Barley HORVU2Hr1G012300.2 , HORVU2Hr1G012300.3 , HORVU2Hr1G012300.4 , HORVU3Hr1G082310.22 , HORVU3Hr1G082310.23 , HORVU3Hr1G082310.20 , HORVU3Hr1G082310.21 , HORVU3Hr1G082310.26 , HORVU3Hr1G082310.27 , HORVU3Hr1G082310.24 , HORVU3Hr1G082310.25 , HORVU3Hr1G082310.28 , HORVU3Hr1G082310.29 , HORVU3Hr1G082310.19 , HORVU3Hr1G082310.18 , HORVU3Hr1G082310.13 , HORVU3Hr1G082310.12 , HORVU3Hr1G082310.11 , HORVU3Hr1G082310.10 , HORVU3Hr1G082310.17 , HORVU3Hr1G082310.16 , HORVU3Hr1G082310.15 , HORVU3Hr1G082310.14 , HORVU1Hr1G007880.1 , HORVU2Hr1G012300.1 , HORVU3Hr1G082310.9 , HORVU3Hr1G082310.8 , HORVU3Hr1G082310.3 , HORVU3Hr1G082310.2 , HORVU3Hr1G082310.1 , HORVU3Hr1G082310.7 , HORVU3Hr1G082310.6 , HORVU3Hr1G082310.5 , HORVU3Hr1G082310.4 , HORVU7Hr1G085250.3 , HORVU7Hr1G085250.2 , HORVU7Hr1G085250.1 , HORVU5Hr1G104860.8 , HORVU5Hr1G104860.2 , HORVU5Hr1G104860.3 , HORVU5Hr1G104860.1 , HORVU5Hr1G104860.6 , HORVU5Hr1G104860.7 , HORVU5Hr1G104860.4 , HORVU5Hr1G104860.5
Wheat TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS3D02G376100 , TraesCS2B02G088800 , TraesCS5D02G442200 , TraesCS5A02G434400 , TraesCS5A02G434400 , TraesCS2D02G072800 , TraesCS2A02G073800 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS3A02G383100 , TraesCS2B02G088500 , TraesCS3B02G415500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G372700 expressed protein -
2 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
3 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
4 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.007G167500 expressed protein -
6 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
7 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
11 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
13 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
15 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
16 Sobic.007G000100 PWWP domain containing protein, expressed -
17 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
18 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
19 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
20 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14


Gene co-expression network
sample Sobic003G119000 Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic002G006900 Sobic002G006900 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic005G112300 Sobic005G112300 Sobic003G372700--Sobic005G112300 Sobic002G191800 Sobic002G191800 Sobic003G372700--Sobic002G191800 Sobic009G040600 Sobic009G040600 Sobic003G372700--Sobic009G040600 Sobic003G372700--Sobic002G309600 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G280800--Sobic003G372700 Sobic007G065400--Sobic002G006900 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic007G167500--Sobic003G119000 Sobic007G167500--Sobic002G006900 Sobic003G397800 Sobic003G397800 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic010G101800 Sobic010G101800 Sobic007G167500--Sobic010G101800 Sobic007G167500--Sobic007G065400 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic007G167500--Sobic003G372700 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic007G126600--Sobic001G241200 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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