Gene annotation
Transcriptome id Sobic.005G207500.1,Sobic.005G207500.2
Synonym Sb05g026170
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1B6PTS3 , A0A1B6PTS5
Pfam PF05496 PF00498
Panther DB PTHR23074 PTHR23074:SF70
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G02890 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os11g43970.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036137 , Zm00025a002712 , Zm00025a015408 , Zm00025a011311 , Zm00025a042366 , Zm00025a039098 , Zm00025a029179 , Zm00025a015940 , Zm00025a033723 , Zm00025a034504
Brachypodium KQJ86413 , KQK21732 , KQJ87391 , KQJ87390 , KQJ86414
Barley HORVU4Hr1G033300.7 , HORVU4Hr1G033300.6 , HORVU4Hr1G033300.5 , HORVU4Hr1G033300.4 , HORVU4Hr1G033300.3 , HORVU4Hr1G033300.2 , HORVU4Hr1G033300.1 , HORVU4Hr1G033300.9 , HORVU4Hr1G033300.8 , HORVU4Hr1G033300.36 , HORVU4Hr1G033300.18 , HORVU4Hr1G033300.17 , HORVU4Hr1G033300.16 , HORVU4Hr1G033300.13 , HORVU4Hr1G033300.12 , HORVU4Hr1G033300.11 , HORVU4Hr1G033300.10 , HORVU4Hr1G033300.15 , HORVU4Hr1G033300.19 , HORVU4Hr1G033300.14 , HORVU4Hr1G033300.31 , HORVU4Hr1G033300.30 , HORVU4Hr1G033300.33 , HORVU4Hr1G033300.32 , HORVU4Hr1G033300.35 , HORVU4Hr1G033300.34 , HORVU4Hr1G033300.37 , HORVU4Hr1G033300.26 , HORVU4Hr1G033300.27 , HORVU4Hr1G033300.24 , HORVU4Hr1G033300.25 , HORVU4Hr1G033300.22 , HORVU4Hr1G033300.23 , HORVU4Hr1G033300.20 , HORVU4Hr1G033300.21 , HORVU4Hr1G033300.28 , HORVU4Hr1G033300.29 , HORVU4Hr1G046420.18 , HORVU4Hr1G046420.19 , HORVU4Hr1G046420.14 , HORVU4Hr1G046420.15 , HORVU4Hr1G046420.17 , HORVU4Hr1G046420.10 , HORVU4Hr1G046420.11 , HORVU4Hr1G046420.12 , HORVU4Hr1G046420.13 , HORVU4Hr1G046420.21 , HORVU4Hr1G046420.20 , HORVU4Hr1G046420.22 , HORVU4Hr1G046420.6 , HORVU4Hr1G046420.7 , HORVU4Hr1G046420.4 , HORVU4Hr1G046420.5 , HORVU4Hr1G046420.2 , HORVU4Hr1G046420.3 , HORVU4Hr1G046420.8 , HORVU4Hr1G046420.9
Wheat TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4B02G126300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4B02G126300 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4A02G169300 , TraesCS4D02G145100 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4B02G126300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4A02G169300 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100 , TraesCS4D02G145100
Populus -


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cDNA sequences
Sobic.005G207500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
2 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
3 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
4 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
6 Sobic.002G353600 expressed protein -
7 Sobic.010G069100 expressed protein -
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
10 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.007G000100 PWWP domain containing protein, expressed -
12 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
13 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.007G090430 - -
15 Sobic.002G264200 RNA recognition motif containing protein, expressed -
16 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
17 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
18 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
19 Sobic.001G456900 expressed protein -
20 Sobic.007G167500 expressed protein -


Gene co-expression network
sample Sobic005G207500 Sobic005G207500 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic002G153700 Sobic002G153700 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic002G353600 Sobic002G353600 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200 Sobic003G059750--Sobic007G103600 Sobic003G059750--Sobic005G207500 Sobic005G112300 Sobic005G112300 Sobic003G059750--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic003G059750--Sobic010G279450 Sobic002G404700 Sobic002G404700 Sobic003G059750--Sobic002G404700 Sobic003G444800 Sobic003G444800 Sobic003G059750--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic003G059750--Sobic001G311500 Sobic002G405800 Sobic002G405800 Sobic003G059750--Sobic002G405800 Sobic003G059750--Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic007G103600--Sobic003G059750 Sobic007G103600--Sobic005G207500 Sobic005G118600 Sobic005G118600 Sobic007G103600--Sobic005G118600 Sobic007G103600--Sobic003G444800 Sobic007G103600--Sobic002G071500 Sobic008G153000 Sobic008G153000 Sobic007G103600--Sobic008G153000 Sobic007G103600--Sobic003G119000 Sobic007G103600--Sobic002G264200 Sobic006G032500 Sobic006G032500 Sobic007G103600--Sobic006G032500 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic007G065400 Sobic007G065400 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic003G119000--Sobic001G241200 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic008G009700--Sobic002G153700 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic003G397800 Sobic003G397800 Sobic002G353600--Sobic003G397800 Sobic007G146900 Sobic007G146900 Sobic002G353600--Sobic007G146900 Sobic002G297200 Sobic002G297200 Sobic002G353600--Sobic002G297200 Sobic002G353600--Sobic005G207500 Sobic002G353600--Sobic002G264200 Sobic002G353600--Sobic003G059750 Sobic001G206100 Sobic001G206100 Sobic002G353600--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic002G353600--Sobic004G257400 Sobic003G445400 Sobic003G445400 Sobic002G353600--Sobic003G445400 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic001G026200--Sobic002G071500 Sobic001G026200--Sobic010G116600 Sobic001G026200--Sobic002G153700 Sobic010G236400 Sobic010G236400 Sobic001G026200--Sobic010G236400 Sobic003G360400 Sobic003G360400 Sobic001G026200--Sobic003G360400 Sobic001G026200--Sobic009G119000 Sobic001G398800 Sobic001G398800 Sobic001G026200--Sobic001G398800 Sobic001G026200--Sobic003G119000 Sobic009G044800 Sobic009G044800 Sobic001G026200--Sobic009G044800
Octagon: transcription factors


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