Gene annotation
Transcriptome id Sobic.002G404700.1
Synonym Sb02g041910, CHR5
Functional annotation expressed protein
UniProt A0A1B6QG41
Pfam PF09111 PF04851 PF13907 PF00271 PF00385
Panther DB PTHR10799 PTHR10799:SF70
NCBI CDD -
KEGG Orthology K11367; chromodomain-helicase-DNA-binding protein 1
Gene Ontology GO:0016818; hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0006338chromatin remodeling GO:0005634nucleus GO:0005524ATP binding GO:0003676nucleic acid binding GO:0016787hydrolase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G13370 : chromatin remodeling 5
RAP-DB (Rice) LOC_Os07g46590.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK14839
Barley HORVU2Hr1G022450.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G404700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405800 PHD-finger family protein, expressed -
2 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
3 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
4 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
5 Sobic.004G314000 expressed protein -
6 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
7 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
11 Sobic.001G363500 DIRP family protein, putative, expressed -
12 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
13 Sobic.003G372700 expressed protein -
14 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.007G117400 expressed protein -
16 Sobic.007G062800 SET domain containing protein, expressed -
17 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
18 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
19 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
20 Sobic.005G118600 NB-ARC domain containing protein, expressed -


Gene co-expression network
sample Sobic002G404700 Sobic002G404700 Sobic002G405800 Sobic002G405800 Sobic002G404700--Sobic002G405800 Sobic003G059750 Sobic003G059750 Sobic002G404700--Sobic003G059750 Sobic002G309600 Sobic002G309600 Sobic002G404700--Sobic002G309600 Sobic007G126600 Sobic007G126600 Sobic002G404700--Sobic007G126600 Sobic004G314000 Sobic004G314000 Sobic002G404700--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic002G404700--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic002G404700--Sobic010G279450 Sobic003G119000 Sobic003G119000 Sobic002G404700--Sobic003G119000 Sobic001G241200 Sobic001G241200 Sobic002G404700--Sobic001G241200 Sobic007G062800 Sobic007G062800 Sobic002G405800--Sobic007G062800 Sobic002G405800--Sobic005G112300 Sobic002G405800--Sobic002G404700 Sobic010G010700 Sobic010G010700 Sobic002G405800--Sobic010G010700 Sobic002G405800--Sobic010G279450 Sobic002G008900 Sobic002G008900 Sobic002G405800--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G405800--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic002G405800--Sobic001G289600 Sobic010G247800 Sobic010G247800 Sobic002G405800--Sobic010G247800 Sobic007G103600 Sobic007G103600 Sobic003G059750--Sobic007G103600 Sobic005G207500 Sobic005G207500 Sobic003G059750--Sobic005G207500 Sobic003G059750--Sobic005G112300 Sobic003G059750--Sobic010G279450 Sobic003G059750--Sobic002G404700 Sobic003G444800 Sobic003G444800 Sobic003G059750--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic003G059750--Sobic001G311500 Sobic003G059750--Sobic002G405800 Sobic002G071500 Sobic002G071500 Sobic003G059750--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic007G126600--Sobic001G241200 Sobic010G139000 Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic005G008800 Sobic005G008800 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic010G279450--Sobic002G405800 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic008G028700 Sobic008G028700 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G279450--Sobic010G247800 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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